View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_2 (Length: 646)
Name: NF13775_low_2
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 627
Target Start/End: Complemental strand, 39394688 - 39394069
Alignment:
| Q |
9 |
acatcatcaaacaacatcagtaacgtggatccagccaaatgttaaccgattctaataccgatcttaatccaatgtgaaattctatatccaatctgagttg |
108 |
Q |
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| T |
39394688 |
acatcatcaaacagcatcagtaacgtggatccagccaaatgtta-ccgattctactaccgatcttaatccaatgtgaaattatatatccaatctgagttg |
39394590 |
T |
|
| Q |
109 |
taatcagaacacaccaactaaacctgaagaaacccattattgattcagaaccataacttctttaaactgaattaattgattcatgtattggaaaggtttt |
208 |
Q |
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| T |
39394589 |
taatcagaaaacaccaactaaacctgaagaaacccattattgattcagaaccataacttctttaaactgaattaattgattcatgtattggaaaggtttt |
39394490 |
T |
|
| Q |
209 |
atctta---ggagatcactcgtgcgtgtgcctagtgacccaaccagtgcccaacccaattaccagccacaaaatgaccatatttatattagttgaaaacg |
305 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39394489 |
atcttattaggagatcactattgcgtgtgcctagtgacccaaccagtgcccaaaccaattaccagccacaaaatgaccatatt-atattagttgaaaacg |
39394391 |
T |
|
| Q |
306 |
aaaaaggaattctagagacacgtgtccaattcaaaaatgctaatctgtatgaatctagcggtggcaattcctcgaaacagaatacgcatttccactatca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39394390 |
aaaaaggaattctagagacacgtgtccaattcaaaaatgctaatctgtatgaatctagcggtggcaattcctcgaaacagaatacgcatttccactatca |
39394291 |
T |
|
| Q |
406 |
aatcggttcaatctcaagattctcaacccatggatcaccccaagaaagtggttgtttgcggcggcggagtcatcggcgtttgcactgcttactttctcgc |
505 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39394290 |
aatctgttcaatctcaagattctcaacccatggatcacccgaagagagtggttgtttgcggcggcggagtcatcggcgtttgcactgcttactttctcac |
39394191 |
T |
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| Q |
506 |
caagaaaggtgcctccgtcacactcatcgagaaatccaccatcgcctgtgccgcttccggtaaagctggtggatttctggctttagattggtgtgacggt |
605 |
Q |
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| T |
39394190 |
caagaaaggtgcctccgtcacactcatcgagaaatccaccatcgcctgtgccgcttccggtaaagccggtggatttctcgctttagattggtgtgacgga |
39394091 |
T |
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| Q |
606 |
ggcccagtggaacaccttgctc |
627 |
Q |
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| T |
39394090 |
ggcccagttgaacaccttgctc |
39394069 |
T |
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