View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13775_low_20 (Length: 293)

Name: NF13775_low_20
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13775_low_20
NF13775_low_20
[»] chr7 (11 HSPs)
chr7 (7-293)||(17736162-17736448)
chr7 (150-289)||(17708512-17708651)
chr7 (149-289)||(17699403-17699543)
chr7 (150-289)||(16722389-16722528)
chr7 (7-95)||(16722583-16722671)
chr7 (7-95)||(17699597-17699685)
chr7 (7-95)||(17708706-17708794)
chr7 (149-289)||(17718336-17718476)
chr7 (7-95)||(17718530-17718618)
chr7 (7-95)||(17736943-17737031)
chr7 (7-79)||(16730588-16730660)
[»] chr8 (2 HSPs)
chr8 (165-259)||(9692480-9692574)
chr8 (165-259)||(9675458-9675552)
[»] chr3 (7 HSPs)
chr3 (165-259)||(46498217-46498311)
chr3 (165-259)||(46539266-46539360)
chr3 (11-88)||(51944321-51944398)
chr3 (17-79)||(5160717-5160779)
chr3 (165-259)||(46480059-46480153)
chr3 (230-259)||(5156514-5156543)
chr3 (11-88)||(46480224-46480301)
[»] chr4 (2 HSPs)
chr4 (171-259)||(35162707-35162795)
chr4 (165-256)||(35155690-35155781)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 17736448 - 17736162
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattggannnnnnnnnnn 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  17736448 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattggagggggcggagg 17736349  T
Q  107 nagacgaaatggagcagcgccgcctgtactgccacgggctgtcgctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctg 206  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736348 gagacgaaatggagcagcgccgcctgtactgccacgggctgtcgctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctg 17736249  T
Q  207 gtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcccttcgaaaaaggtaaagtcaatcctaatttattt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17736248 gtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcccttcgaaaaaggtaaagtcaatcctaatttattt 17736162  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 17708651 - 17708512
Alignment:
Q  150 gctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttg 249  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  17708651 gctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttg 17708552  T
Q  250 tcaaacctcccttcgaaaaaggtaaagtcaatcctaattt 289  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  17708551 tcaaacctcccatagaaaaaggtaaagtcaatcctaattt 17708512  T

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Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 17699543 - 17699403
Alignment:
Q  149 cgctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccattttt 248  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  17699543 cgctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccattttt 17699444  T
Q  249 gtcaaacctcccttcgaaaaaggtaaagtcaatcctaattt 289  Q
    ||||||||||||   | ||||||||||| ||||||||||||    
T  17699443 gtcaaacctcccagagtaaaaggtaaagccaatcctaattt 17699403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 16722528 - 16722389
Alignment:
Q  150 gctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttg 249  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  16722528 gctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttg 16722429  T
Q  250 tcaaacctcccttcgaaaaaggtaaagtcaatcctaattt 289  Q
    |||||||||||   | ||||||||||| ||||||||||||    
T  16722428 tcaaacctcccagagtaaaaggtaaagccaatcctaattt 16722389  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 16722671 - 16722583
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattgga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16722671 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtccattgga 16722583  T

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Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 17699685 - 17699597
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattgga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17699685 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattgga 17699597  T

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Target: chr7; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 17708794 - 17708706
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattgga 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17708794 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtccattgga 17708706  T

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Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 149 - 289
Target Start/End: Complemental strand, 17718476 - 17718336
Alignment:
Q  149 cgctgcagctatcgtaccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccattttt 248  Q
    |||||||||| | ||||||||||| |||| ||||||| |||||||||||| ||||  || |||| | | |||||||||||||||||||||||||||||||    
T  17718476 cgctgcagcttttgtaccttcttcgtttacttcaatgcaagacttctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccattttt 17718377  T
Q  249 gtcaaacctcccttcgaaaaaggtaaagtcaatcctaattt 289  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  17718376 gtcaaacctcccatagaaaaaggtaaagtcaatcctaattt 17718336  T

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Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 17718618 - 17718530
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattgga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17718618 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattgga 17718530  T

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Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 17737031 - 17736943
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtcgattgga 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17737031 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtcgattgga 17736943  T

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Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 16730660 - 16730588
Alignment:
Q  7 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16730660 tgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 9692480 - 9692574
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    ||||| || |||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||| |  | ||||||||||||||||||||||||||||    
T  9692480 ccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaaacctcc 9692574  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 9675458 - 9675552
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    ||||| ||||||| |||||||  |||||| ||||||||| ||| ||||||||  ||||||| |  | ||||||||||||||||||||||||||||    
T  9675458 ccttcctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctcc 9675552  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 46498311 - 46498217
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    ||||||||||||| ||||||||||||||| || |||||  ||| |||| |||| | |||||| | || ||||| ||||||||| |||||||||||    
T  46498311 ccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgactcacagcagagttcaccattttagtcaaacctcc 46498217  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 46539360 - 46539266
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    |||| |||||||| |||||| |||||||| || ||||    || |||| |||| | ||||||| |||||||||||||||||||||||||||||||    
T  46539360 ccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccatttttgtcaaacctcc 46539266  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 51944398 - 51944321
Alignment:
Q  11 cacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 88  Q
    ||||| |||||||||||  || |||||| | || |||||||| ||||||||||| |||||||||||||| ||||||||    
T  51944398 cacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaaagtc 51944321  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 5160779 - 5160717
Alignment:
Q  17 tccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 79  Q
    |||||||||||| ||||||||| |  | |||||||| ||||||||||| ||||||||||||||    
T  5160779 tccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagc 5160717  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 46480153 - 46480059
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    ||||||||||||| ||||||||||||||| ||||||||  ||| |||| |||| | |||||| |  | ||||| |||||| ||||||| ||||||    
T  46480153 ccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgactaactgaagagttcaccatctttgtcagacctcc 46480059  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 259
Target Start/End: Complemental strand, 5156543 - 5156514
Alignment:
Q  230 aggagagtccaccatttttgtcaaacctcc 259  Q
    ||||||||||||||||||||||||||||||    
T  5156543 aggagagtccaccatttttgtcaaacctcc 5156514  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 46480301 - 46480224
Alignment:
Q  11 cacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 88  Q
    ||||| |||||||||||  || |||||  | || |||||||| |||| |||||| |||||||||||||| ||||||||    
T  46480301 cacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtc 46480224  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 35162795 - 35162707
Alignment:
Q  171 tcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacctcc 259  Q
    ||||||| ||||||||||||||| ||||||||| ||| |||  |||| | ||||| |  | | ||||||||||||||||||||||||||    
T  35162795 tcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagtgagtccaccatttttgtcaaacctcc 35162707  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 35155781 - 35155690
Alignment:
Q  165 ccttcttcatttaattcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttttgtcaaacc 256  Q
    |||| ||| |||| |||||| ||| |||||||||||||| || |||| || || | ||||| |  | |||||||||||||||||||||||||    
T  35155781 cctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgaccttcaagagagtccaccatttttgtcaaacc 35155690  T

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