View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_22 (Length: 279)
Name: NF13775_low_22
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 25265803 - 25265666
Alignment:
| Q |
123 |
ttggccgaatttcttaatagaaattacttgttaatgaaacttattactaattaaagtagttagtaatactttgtatctaaggatgaaagtaggacaggtc |
222 |
Q |
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| T |
25265803 |
ttggccgaatttcttaatagaaattacttgttaatgaaacttattactaattaaagtagttagtagtactttgtatctaaggatgaaagtaggacaggtc |
25265704 |
T |
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| Q |
223 |
attttctagaggtcatcaatcacattcaatgatcaaac |
260 |
Q |
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| T |
25265703 |
attttctagaggtcatcaatcacattcaatgatcaaac |
25265666 |
T |
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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 25265905 - 25265810
Alignment:
| Q |
1 |
gtggtgatgcttgatgacaaaggatattaaattaagtttagttaagttagactttcttaatttatgtttgaatgttgtgatggaacaaatatagtt |
96 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25265905 |
gtggtgatgcttgaggacaaaggatattaaattaagtttagttaagttagactttcttaatttaagtttgaatgttgtgatggaacaaatatagtt |
25265810 |
T |
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