View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_26 (Length: 241)
Name: NF13775_low_26
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 24469001 - 24469191
Alignment:
| Q |
18 |
ctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctggattcatatttctatagccta |
117 |
Q |
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| T |
24469001 |
ctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctggattcatattgctatagccta |
24469100 |
T |
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| Q |
118 |
aagaggatatgatattttgatatgcttggtaatacatggaactaattgatttatacaaactcattaatcgaagtcaaaagccataatgcat |
208 |
Q |
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| T |
24469101 |
aagaggatatgatattttgatatgcttggtaatacatggaactaattgatttatacaaactcattaatcgaagtcaaaagccataatgcat |
24469191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 24490261 - 24490334
Alignment:
| Q |
23 |
aatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctg |
96 |
Q |
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| T |
24490261 |
aatgagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacatttctg |
24490334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 24469227 - 24469265
Alignment:
| Q |
203 |
atgcatggaaattgtggctggctatagttgatgaatatt |
241 |
Q |
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| T |
24469227 |
atgcatggaaattgtggctggctatagttgatgaatatt |
24469265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 31137628 - 31137708
Alignment:
| Q |
18 |
ctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
98 |
Q |
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| T |
31137628 |
ctaccaatgagggaaataaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31137708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 31151410 - 31151330
Alignment:
| Q |
18 |
ctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
98 |
Q |
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| T |
31151410 |
ctaccaatgagtgaaagaaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
31151330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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