View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_27 (Length: 240)
Name: NF13775_low_27
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 38748763 - 38748956
Alignment:
| Q |
33 |
ctgtgacataacaaacattcagttggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaat |
132 |
Q |
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| T |
38748763 |
ctgtgacataacaaacattcagctggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaat |
38748862 |
T |
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| Q |
133 |
gtttccccaaatagaaccatagtttttgtatttgtttattacaaaggcacccttgtatatgaaggctatgatttgtttgcattattgatgtgga |
226 |
Q |
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| T |
38748863 |
gtttccccaaatagaaccatagtttttgtatttgtttattacaaaggcacccttgtatatgaaggctatgatttctttgcattattgatgtgga |
38748956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 37139171 - 37139274
Alignment:
| Q |
34 |
tgtgacataacaaacattcagttggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaatg |
133 |
Q |
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|||||| ||||| ||||||||||| |||||||||| || ||||||| || |||||||||||||| ||||||||||||||||| | ||||||||| |||| |
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| T |
37139171 |
tgtgacttaacatacattcagttgttggatctctccgaaaacaatctttcaggacgaattttcaaatgcttgaagaatttttcagcaatgtctcaaaatg |
37139270 |
T |
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| Q |
134 |
tttc |
137 |
Q |
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|||| |
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| T |
37139271 |
tttc |
37139274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 37132101 - 37132194
Alignment:
| Q |
45 |
aaacattcagttggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaatgtttcc |
138 |
Q |
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| T |
37132101 |
aaacattgagctgttggatctctcagaaaacaatctatcaggacgaattttcaagtgcttgaagaatttttccgcaatgtctcaaaatgtttcc |
37132194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 37164555 - 37164650
Alignment:
| Q |
41 |
taacaaacattcagttggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaatgttt |
136 |
Q |
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|||||||||| |||||| ||||||||||||| ||||||| || |||| ||||||||| |||| |||||||||||||| ||||||||| ||||||| |
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| T |
37164555 |
taacaaacatccagttgttggatctctctgaaaacaatctttcaggactaattttcaaatgctggaagaatttttctgcaatgtctcaaaatgttt |
37164650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 37139331 - 37139372
Alignment:
| Q |
185 |
ttgtatatgaaggctatgatttgtttgcattattgatgtgga |
226 |
Q |
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| T |
37139331 |
ttgtatatgaaggctacgatttgattgcattgttgatgtgga |
37139372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 35143166 - 35143130
Alignment:
| Q |
190 |
tatgaaggctatgatttgtttgcattattgatgtgga |
226 |
Q |
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| T |
35143166 |
tatgaaggctatgatttggttgcattattaatgtgga |
35143130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 3023034 - 3022842
Alignment:
| Q |
34 |
tgtgacataacaaacattcagttggtggatctctctgagaacaatccatcgggacgaattttcaagtgcttgaagaatttttctgtaatgtctcagaatg |
133 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||| |||| |
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| T |
3023034 |
tgtgacataacaaacattcagctgttggatctctctgagaacaatctatcaggacgaattttcaagtgcttgaagaatttttccgcaatgtctcaaaatg |
3022935 |
T |
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| Q |
134 |
tttccccaaatagaaccatagtttttgtatttgtttattacaaaggcacccttgtatatgaaggctatgatttgtttgcattattgatgtgga |
226 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
3022934 |
tttccccaaataaaaccatagtttctgtatttgtttattacaaaggcacccttgtatatgaaggctatgatttgattgcattgttgatgtgga |
3022842 |
T |
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