View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_30 (Length: 223)
Name: NF13775_low_30
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 3644928 - 3645122
Alignment:
| Q |
12 |
ccaagaatatcatcaaatttatagcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttact |
111 |
Q |
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| T |
3644928 |
ccaagtatatcatcaaatttatagcactcaacatagccaaaagccagtaataataattaagcctcccttggttaagattatctgcaatccatggtttact |
3645027 |
T |
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| Q |
112 |
tggacctgttattttattcactgtagacactaataaagagctgaagaaaaatcctaaggatcttgaactcaagaatagtcccatgctcatagttt |
206 |
Q |
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| T |
3645028 |
tggacctgttattttattcactgtagacactaataaagagctgaagaaaaatcctaaggatcttgaactcaagaatagtcccatgctcatagttt |
3645122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 3655608 - 3655757
Alignment:
| Q |
18 |
atatcatcaaatttatagcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttacttggacc |
117 |
Q |
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| T |
3655608 |
atatcaccacatttatagcacttagcatagccaatagccaataaaaatcatagagcctcccttgatcaagattatccgcaatccatggtttatttggacc |
3655707 |
T |
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| Q |
118 |
tgttattttattcactgtagacactaataaagagctgaagaaaaatccta |
167 |
Q |
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| T |
3655708 |
ggtcacattgttcactagagtcactaataatgagctaaagaaaaacccta |
3655757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 9572101 - 9572228
Alignment:
| Q |
34 |
agcactcaacatagccaaaagccagtaataatcattaagcctcccttggttaagattatctgcaatccatggtttacttggacctgttattttattcact |
133 |
Q |
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| T |
9572101 |
agcactcaacaaagtcaaaagccaagaatggtcat-aagcctcccttggttaaggtaatctgtaatccatggcttacttggacctgttattgtattccct |
9572199 |
T |
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| Q |
134 |
gtagacactaataaagagctgaagaaaaa |
162 |
Q |
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| T |
9572200 |
gctgacagtgataaagaactaaagaaaaa |
9572228 |
T |
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