View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13775_low_33 (Length: 202)

Name: NF13775_low_33
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13775_low_33
NF13775_low_33
[»] chr2 (10 HSPs)
chr2 (55-187)||(17882098-17882228)
chr2 (12-56)||(22388138-22388182)
chr2 (12-56)||(23367022-23367066)
chr2 (12-57)||(12969739-12969784)
chr2 (12-56)||(1102734-1102778)
chr2 (12-56)||(1646520-1646564)
chr2 (12-56)||(3519140-3519184)
chr2 (12-56)||(39938403-39938447)
chr2 (12-56)||(40756911-40756955)
chr2 (15-57)||(37673742-37673784)
[»] scaffold0054 (1 HSPs)
scaffold0054 (12-57)||(45686-45731)
[»] chr8 (15 HSPs)
chr8 (12-57)||(40918730-40918775)
chr8 (12-56)||(7147146-7147190)
chr8 (12-56)||(11646325-11646369)
chr8 (12-56)||(30999524-30999568)
chr8 (12-56)||(36068313-36068357)
chr8 (12-56)||(40058303-40058347)
chr8 (12-56)||(43275399-43275443)
chr8 (12-57)||(37345804-37345849)
chr8 (12-56)||(2539930-2539974)
chr8 (12-56)||(3585684-3585728)
chr8 (12-56)||(11174223-11174267)
chr8 (12-56)||(27035228-27035272)
chr8 (12-56)||(28568151-28568195)
chr8 (12-56)||(28575744-28575788)
chr8 (12-56)||(35866846-35866890)
[»] chr4 (17 HSPs)
chr4 (12-57)||(12071793-12071838)
chr4 (12-56)||(14261277-14261321)
chr4 (12-56)||(21310654-21310698)
chr4 (12-56)||(24706247-24706291)
chr4 (12-56)||(25704884-25704928)
chr4 (12-56)||(44569070-44569114)
chr4 (12-54)||(21661537-21661579)
chr4 (12-54)||(21670301-21670343)
chr4 (12-56)||(22321268-22321312)
chr4 (12-56)||(40122487-40122531)
chr4 (12-55)||(21064994-21065037)
chr4 (12-56)||(20249014-20249058)
chr4 (12-46)||(50768095-50768129)
chr4 (21-56)||(39295418-39295453)
chr4 (12-56)||(19692955-19692999)
chr4 (12-56)||(19703540-19703584)
chr4 (20-56)||(34324618-34324654)
[»] chr7 (6 HSPs)
chr7 (12-56)||(27814044-27814088)
chr7 (12-56)||(40349194-40349238)
chr7 (12-56)||(25614353-25614397)
chr7 (12-56)||(36453124-36453168)
chr7 (12-56)||(10981741-10981785)
chr7 (12-56)||(47110683-47110727)
[»] chr6 (13 HSPs)
chr6 (12-56)||(1605811-1605855)
chr6 (12-56)||(7761533-7761577)
chr6 (12-56)||(8626715-8626759)
chr6 (12-56)||(29260425-29260469)
chr6 (12-57)||(4129659-4129704)
chr6 (12-56)||(13757440-13757484)
chr6 (12-56)||(15064695-15064739)
chr6 (12-56)||(17942676-17942720)
chr6 (12-56)||(31559738-31559782)
chr6 (12-49)||(8235858-8235895)
chr6 (18-56)||(15064933-15064971)
chr6 (18-56)||(19996322-19996360)
chr6 (12-57)||(30734482-30734527)
[»] chr5 (12 HSPs)
chr5 (12-56)||(12806853-12806897)
chr5 (12-56)||(30720492-30720536)
chr5 (12-56)||(36561099-36561143)
chr5 (12-56)||(40886610-40886654)
chr5 (12-56)||(25683229-25683273)
chr5 (15-56)||(25773885-25773926)
chr5 (12-56)||(10285058-10285102)
chr5 (12-56)||(23097724-23097768)
chr5 (12-49)||(11319789-11319826)
chr5 (12-56)||(734339-734383)
chr5 (12-56)||(1056625-1056669)
chr5 (12-56)||(37900623-37900667)
[»] chr3 (14 HSPs)
chr3 (12-56)||(13365076-13365120)
chr3 (12-56)||(19241668-19241712)
chr3 (12-56)||(29375365-29375409)
chr3 (12-56)||(36881513-36881557)
chr3 (12-56)||(46694110-46694154)
chr3 (12-57)||(32834988-32835033)
chr3 (12-57)||(3383309-3383354)
chr3 (12-56)||(199088-199132)
chr3 (12-56)||(18355868-18355912)
chr3 (12-56)||(23087931-23087975)
chr3 (12-56)||(48820573-48820617)
chr3 (18-56)||(19912177-19912215)
chr3 (18-56)||(38806344-38806382)
chr3 (24-56)||(37293437-37293469)
[»] chr1 (12 HSPs)
chr1 (12-56)||(284566-284610)
chr1 (12-56)||(23045279-23045323)
chr1 (12-56)||(24771906-24771950)
chr1 (12-56)||(40783657-40783701)
chr1 (16-58)||(321863-321905)
chr1 (12-56)||(33082977-33083021)
chr1 (12-56)||(23526472-23526516)
chr1 (12-56)||(47037852-47037896)
chr1 (12-56)||(51064754-51064798)
chr1 (18-57)||(51064995-51065034)
chr1 (18-56)||(3943766-3943804)
chr1 (18-56)||(41959812-41959850)
[»] scaffold1770 (1 HSPs)
scaffold1770 (12-57)||(394-439)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 17882228 - 17882098
Alignment:
Q  55 taacataatattagaatcaaacatacagttatatttaccatattatactcatataactaaccataatcctaactnnnnnnntaatcattacaactaaaca 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||       |||||||||||||||||||    
T  17882228 taacataatattagaatcaaacatacagttatatttaccatattatactc--ataactaaccataatcctaactaaaaaaataatcattacaactaaaca 17882131  T
Q  155 agtctctatcattttctgatatcggacataagt 187  Q
    |||||||||||||||||||||||||||||||||    
T  17882130 agtctctatcattttctgatatcggacataagt 17882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 22388182 - 22388138
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22388182 aaattattctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 23367022 - 23367066
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23367022 aaattattctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 12969784 - 12969739
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  12969784 aaattattctccaaaatggacaagtattatgaaacggagggagtaa 12969739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 1102734 - 1102778
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  1102734 aaattattctctcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 1646520 - 1646564
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  1646520 aaattattctctaaaatggacaggtattatgaaacggagggagta 1646564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 3519140 - 3519184
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  3519140 aaattattctctaaaatggacaagtattatgaaacggaggaagta 3519184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 39938403 - 39938447
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  39938403 aaattattctctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40756955 - 40756911
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  40756955 aaattattctccaaaatggacaagtattatgaaacggagggagta 40756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 37673784 - 37673742
Alignment:
Q  15 ttattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  37673784 ttattctctaaaatggacaagtattatgaaacggaaggagtaa 37673742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 45686 - 45731
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45686 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 45731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 40918775 - 40918730
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40918775 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 40918730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 7147146 - 7147190
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7147146 aaattattctctaaaatggacaagtattatgaaacggagggagta 7147190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 11646369 - 11646325
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11646369 aaattattctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 30999568 - 30999524
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30999568 aaattattctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 36068313 - 36068357
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36068313 aaattattctctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40058347 - 40058303
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40058347 aaattattctctaaaatggacaagtattatgaaacggagggagta 40058303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 43275443 - 43275399
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43275443 aaattattctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 37345804 - 37345849
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  37345804 aaattattctctaaaatggacaagtattatgaaacggaaggagtaa 37345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2539974 - 2539930
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  2539974 aaattattctttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 3585684 - 3585728
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  3585684 aaattattctctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 11174267 - 11174223
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||    
T  11174267 aaattattctttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27035228 - 27035272
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  27035228 aaattattctccaaaatgaacaagtattatgaaacggaggcagta 27035272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28568151 - 28568195
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28568151 aaataattctccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28575744 - 28575788
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||| |||||| |||||||||||||||| ||||| ||||||||||    
T  28575744 aaataattctccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 35866846 - 35866890
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  35866846 aaattattctccaaaatagacaagtattgtgaaacggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 12071793 - 12071838
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12071793 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 12071838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 14261277 - 14261321
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14261277 aaattattctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 21310654 - 21310698
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  21310654 aaattattctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24706291 - 24706247
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24706291 aaattattctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25704884 - 25704928
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25704884 aaattattctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 44569070 - 44569114
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44569070 aaattattctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 21661579 - 21661537
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggag 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21661579 aaattattctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 21670343 - 21670301
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggag 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21670343 aaattattctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 22321312 - 22321268
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  22321312 aaattattctctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40122531 - 40122487
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  40122531 aaattattctctaaaatggacaagtattatgaaacggagagagta 40122487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 21064994 - 21065037
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagt 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  21064994 aaattattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 20249058 - 20249014
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||    
T  20249058 aaattattctccaaaatggacaagtattatgaaacggagtgagta 20249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 50768095 - 50768129
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaac 46  Q
    |||||||||||||||||||||||||||||||||||    
T  50768095 aaattattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 39295418 - 39295453
Alignment:
Q  21 tctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39295418 tctaaaatggacaagtattatgaaacggaaggagta 39295453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19692955 - 19692999
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19692955 aaattattctctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19703540 - 19703584
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||    
T  19703540 aaattattctctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 34324654 - 34324618
Alignment:
Q  20 ctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||||||| || ||||||    
T  34324654 ctctaaaatggacaagtattatgaaacagatggagta 34324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 27814044 - 27814088
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27814044 aaattattctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 40349194 - 40349238
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40349194 aaattattctctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25614397 - 25614353
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  25614397 aaattattctctaaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 36453168 - 36453124
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  36453168 aaattattctctaaaatggacaagtattatgaaacggagagagta 36453124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10981741 - 10981785
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  10981741 aaattattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 47110683 - 47110727
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||| | ||||||||||||||||||||||||    
T  47110683 aaattattctctaaaatgaataagtattatgaaacggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 1605811 - 1605855
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1605811 aaattattctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 7761533 - 7761577
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7761533 aaattattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 8626715 - 8626759
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8626715 aaattattctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29260425 - 29260469
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29260425 aaattattctctaaaatggacaagtattatgaaacggagggagta 29260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 4129659 - 4129704
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  4129659 aaattattttctaaaatggacaagtattatgaaacggagggagtaa 4129704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 13757440 - 13757484
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  13757440 aaattattctctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15064739 - 15064695
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  15064739 aaattattctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 17942676 - 17942720
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  17942676 aaattattctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 31559782 - 31559738
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  31559782 aaattattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 8235858 - 8235895
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacgga 49  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8235858 aaattattctctaaaatagacaagtattatgaaacgga 8235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 15064933 - 15064971
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15064933 ttctctaaaatggacatgtattttgaaacggagggagta 15064971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 19996360 - 19996322
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19996360 ttctctaaaatggacatgtattttgaaacggagggagta 19996322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 30734527 - 30734482
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||||||| || |||||||||||||||||||||| ||||| |||||    
T  30734527 aaattattttccaaaatggacaagtattatgaaaaggaggaagtaa 30734482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 12806897 - 12806853
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12806897 aaattattctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 30720536 - 30720492
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30720536 aaattattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 36561143 - 36561099
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36561143 aaattattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40886654 - 40886610
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40886654 aaattattctctaaaatggacaagtattatgaaacggagggagta 40886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25683273 - 25683229
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  25683273 aaattattctccaaaatggacaagtattatgaaacggagggagta 25683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 25773885 - 25773926
Alignment:
Q  15 ttattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  25773885 ttattctctaaaatggacaagtattatgaaacggagagagta 25773926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10285102 - 10285058
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  10285102 aaattattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 23097768 - 23097724
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  23097768 aaattattctccaaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 11319789 - 11319826
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacgga 49  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11319789 aaattattctctaaaatagacaagtattatgaaacgga 11319826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 734383 - 734339
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||    
T  734383 aaattattctccaaaatggacaagtattgtgaaacggtgggagta 734339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1056669 - 1056625
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||| ||||  |||||||||| ||||||||||||||||    
T  1056669 aaattattctccaaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 37900667 - 37900623
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||  ||||| |||||||||||||||||||| ||||||    
T  37900667 aaattattcttcaaaatagacaagtattatgaaacggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 13365076 - 13365120
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13365076 aaattattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 19241712 - 19241668
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19241712 aaattattctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 29375365 - 29375409
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29375365 aaattattctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 36881513 - 36881557
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36881513 aaattattctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 46694154 - 46694110
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46694154 aaattattctctaaaatggacaagtattatgaaacggagggagta 46694110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 32835033 - 32834988
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  32835033 aaattattctctacaatggacaagtattatgaaacggagggagtaa 32834988  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 3383309 - 3383354
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||||||||||||||||||||||||||||| ||||| | |||||||    
T  3383309 aaattattctctaaaatggacaagtattataaaacgaaaggagtaa 3383354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 199088 - 199132
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||    
T  199088 aaattattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 18355912 - 18355868
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||    
T  18355912 aaattattcttcaaaatggacaagtattgtgaaacggagggagta 18355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 23087975 - 23087931
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||    
T  23087975 aaattattctttaaaatcgacaagtattatgaaacggaggaagta 23087931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 48820573 - 48820617
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||| | ||||||||||||||||||||||||||||| ||||    
T  48820573 aaattattttttaaaatggacaagtattatgaaacggaggaagta 48820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 19912177 - 19912215
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  19912177 ttctctaaaatggacatgtattttgaaacggagggagta 19912215  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 38806344 - 38806382
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  38806344 ttctctaaaatggacatgtattttgaaacggagggagta 38806382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 37293469 - 37293437
Alignment:
Q  24 aaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||||||||||||||    
T  37293469 aaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 284566 - 284610
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  284566 aaattattctctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 23045323 - 23045279
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23045323 aaattattctctaaaatggacaagtattatgaaacggagggagta 23045279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24771950 - 24771906
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24771950 aaattattctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 40783701 - 40783657
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40783701 aaattattctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 321863 - 321905
Alignment:
Q  16 tattctctaaaatggacaagtattatgaaacggagggagtaac 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  321863 tattctctaaaatggacaagtattatgaaacggagggagtaac 321905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 33082977 - 33083021
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  33082977 aaattattctttaaaatggacaagtattatgaaacggagggagta 33083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 23526472 - 23526516
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  23526472 aaattattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 47037896 - 47037852
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  47037896 aaattattctttaaaatagacaagtattatgaaacggagggagta 47037852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 51064798 - 51064754
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||||||||||||||| |||||| || ||||||    
T  51064798 aaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 51064995 - 51065034
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagtaa 51065034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 3943766 - 3943804
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  3943766 ttctctaaaatggacatgtattttgaaacggagggagta 3943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 41959812 - 41959850
Alignment:
Q  18 ttctctaaaatggacaagtattatgaaacggagggagta 56  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  41959812 ttctctaaaatggacatgtattttgaaacggagggagta 41959850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 394 - 439
Alignment:
Q  12 aaattattctctaaaatggacaagtattatgaaacggagggagtaa 57  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  394 aaattattttctaaaatggacaagtattatgaaacggagggagtaa 439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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