View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_4 (Length: 534)
Name: NF13775_low_4
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 38708035 - 38708529
Alignment:
| Q |
1 |
ggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcatttataaagtctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38708035 |
ggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtcggtcacattagtcatttataaagtctc |
38708134 |
T |
|
| Q |
101 |
tgttgagatttatttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagacttatagtctt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38708135 |
tgttgagatttatttaacctgcatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagacttatagtctt |
38708234 |
T |
|
| Q |
201 |
ttacttatcataaatttaaaatatgcatctcaggtatcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctccaaccttggtgccg |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38708235 |
ttacttatcgtaaatttaaaatatgcatctcaggtgtcactgattgtgaaatgatttttcaggtatacagtcattatcatgacctcaaaccttggtgccg |
38708334 |
T |
|
| Q |
301 |
agcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnnnnncatttcaggccagaattgttga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
38708335 |
agcatctcataagtggactttcaggaaaatgcaccatgcaagttgctcgtgatcgagtaatgcaggaagt-aaaaaaacatttcagaccagaattgttga |
38708433 |
T |
|
| Q |
401 |
attcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggttgaaaatgaaggatgtagctagtcgtcttg |
496 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38708434 |
attcgctggatgaagttgttgtatttgatcatctatctcatgagtaattgaggaaggttgcaaggttgaaaatgaaggatgtagctagtcgtcttg |
38708529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 10046259 - 10046521
Alignment:
| Q |
14 |
ttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcatttataaagtctctgttgagatttat |
113 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||| |||||||||| || |||| ||||||||||||||| |
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|
| T |
10046259 |
ttaatacgtttggtccatggaaaa-agctacaaatttggtctttaaatatttcaaatgtcgatcaaattagtcattaatgaagtatctgttgagatttat |
10046357 |
T |
|
| Q |
114 |
ttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgt-----------tttttcctttcgattcttgtttagacttatagtctttt |
202 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| |||||||| |
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| T |
10046358 |
ttaaccgacatttgaaatttggtttttcagacttcattgaatgcgagttttttttttctttctttttcctttcaatacttgtttagacttgtagtctttc |
10046457 |
T |
|
| Q |
203 |
acttatcataaatttaaaatatgcatctcaggtatcactgattgtgaaatgatttttcaggtat |
266 |
Q |
| |
|
||||||| | |||| || |||||||||||| | ||| ||||||||||||| ||||||||||| |
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| T |
10046458 |
acttatcgtgaattaaagatatgcatctcaagcgtcatcgattgtgaaatgagttttcaggtat |
10046521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 496
Target Start/End: Original strand, 10046696 - 10046924
Alignment:
| Q |
267 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
366 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| || ||||||||||||||| | || |||||||||| || |
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|
| T |
10046696 |
acagtcattatcatgacctcaaacctcggcgccgatcatctcataagtggactttcaggaaattgtaccatgcaagttgctcgcgaccgagtaatgctgg |
10046795 |
T |
|
| Q |
367 |
aagtnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggt |
466 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || || |||||||||||||| |||| |||||||||||| ||||||||||||||||| ||| |
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|
| T |
10046796 |
aagtaaaaaag-catttccggccagaattgttgaataggctagacgaagttgttgtattcgatccactatctcacgagcaattgaggaaggttgcaaggt |
10046894 |
T |
|
| Q |
467 |
tgaaaatgaaggatgtagctagtcgtcttg |
496 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| |
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| T |
10046895 |
tgcaaatgaaggatgttgctagtcgtcttg |
10046924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 267 - 496
Target Start/End: Complemental strand, 740182 - 739954
Alignment:
| Q |
267 |
acagtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcagg |
366 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| |
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|
| T |
740182 |
acagtcattatcatgacctcaaaccttggttccgagcatctcctaagtggactttcaggaaaatgtaccatggaagttgctcgcgataaagtaatgcagg |
740083 |
T |
|
| Q |
367 |
aagtnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggt |
466 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||| |||||||||||||| || | ||| |||||| || ||||||||||||||||| || |
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|
| T |
740082 |
aagt-gagaaatcatttcaggccagaattgttgaatcggctggacgaagttgttgtattcgaccctctttctcacaagcaattgaggaaggttgcaagga |
739984 |
T |
|
| Q |
467 |
tgaaaatgaaggatgtagctagtcgtcttg |
496 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |
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| T |
739983 |
tgcaaatgaaggatgtagctaatcgtcttg |
739954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 270 - 496
Target Start/End: Complemental strand, 42449402 - 42449177
Alignment:
| Q |
270 |
gtcattatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaag |
369 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||| |
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|
| T |
42449402 |
gtcattatcatgacctcgaaccttggtgccgatcatctcttaagtggactttcaggaaaatgtaccatccaagtagctcacgatcgagtaatgcaggaag |
42449303 |
T |
|
| Q |
370 |
tnnnnnnnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggttga |
469 |
Q |
| |
|
| |||||| || ||||||||||||| ||| ||||||| ||||| ||| ||| ||| || || ||||||||||||||||| ||||| |
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|
| T |
42449302 |
t-cagtgagcatttcctgctagaattgttgaatcagctgaccaaagttgtagtattcaatcctctttcttaccagcaattgaggaaggttgcaaggttgc |
42449204 |
T |
|
| Q |
470 |
aaatgaaggatgtagctagtcgtcttg |
496 |
Q |
| |
|
|||| |||||||||| || |||||||| |
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|
| T |
42449203 |
aaatcaaggatgtaggtaatcgtcttg |
42449177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 370
Target Start/End: Complemental strand, 742268 - 742172
Alignment:
| Q |
274 |
ttatcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagt |
370 |
Q |
| |
|
||||||||||||| |||||||| || || |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
742268 |
ttatcatgacctcgaaccttggcgctgatcatctccaaagtggactttcaggaaaatgtaccatgcaagttgctcacgatcgagtaatgcaggaagt |
742172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 742130 - 742051
Alignment:
| Q |
413 |
aagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggttgaaaatgaaggatgtagctagtcgt |
492 |
Q |
| |
|
||||||| ||||| ||| ||| |||||| || ||||||||||||||||| ||||| |||| ||||||||||||| |||| |
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|
| T |
742130 |
aagttgtagtattcaatcctctttctcaccagcaattgaggaaggttgcaaggttgcaaatcaaggatgtagctaatcgt |
742051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 42449751 - 42449709
Alignment:
| Q |
36 |
aagagctacaaatttggtctttaaatatttcaaatgtaggtca |
78 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
42449751 |
aagagctacaaagttggtctttcaatatttcaaatgtcggtca |
42449709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 42449662 - 42449602
Alignment:
| Q |
172 |
tttcgattcttgtttagacttatagtcttttacttatcataaatttaaaatatgcatctca |
232 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||||||| | | || |||||||||||||| |
|
|
| T |
42449662 |
tttcaattctagtttagacttatagtctttaacttatcttgagttcgaaatatgcatctca |
42449602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 276 - 496
Target Start/End: Original strand, 45468366 - 45468585
Alignment:
| Q |
276 |
atcatgacctccaaccttggtgccgagcatctcataagtggactttcaggaaaatgcaccatgcaagttgctagtgatcgagtaatgcaggaagtnnnnn |
375 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |||||||||| |||| | |||||||| ||||||||||| |
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|
| T |
45468366 |
atcatgacctctaaccttggtgctgagcatctcttgagtggactttcaggaaaatgtaccatgcaagctgctcgcgatcgagtgatgcaggaagtaagaa |
45468465 |
T |
|
| Q |
376 |
nnncatttcaggccagaattgttgaattcactggatgaagttgttgtatttgatcatctatctcacgagtaattgaggaaggttgcagggttgaaaatga |
475 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| || ||| ||||||| ||||||||| ||||| |||||| |
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|
| T |
45468466 |
gg-catttcaggccagaattgttgaaccgactggacgaagttgttgtatttgatcctctatcacatgagcaattgagaaaggttgcaaggttgcaaatga |
45468564 |
T |
|
| Q |
476 |
aggatgtagctagtcgtcttg |
496 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
45468565 |
aggatgtggctagtcgtcttg |
45468585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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