View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13775_low_6 (Length: 450)
Name: NF13775_low_6
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 28260367 - 28260791
Alignment:
| Q |
13 |
aatatcgatctcataggaaatattttgtttggagaaaagaaga---gatctgctatgatgttcgattttcgatcaactggtcaacctcttgtcgatgatt |
109 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||| |||| || ||||||||||||||||||| |
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| T |
28260367 |
aatatcgatctcatagaaaatattttgtttggagaaaagaagaagagctctgctatgatgtttgattttcggtcaattgaccaacctcttgtcgatgatt |
28260466 |
T |
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| Q |
110 |
gggactgtcttaaaatatttgtaagaaaaataacacaaaatattattagtattgccactttcttgaattttaag---ttagacatcaattgttttgaata |
206 |
Q |
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| T |
28260467 |
ggaactgtcttaaaatacttgtaagaaaaataacacaaaatattattagtattgccactttctcaaacactaacccatttatgatcaattgttttgaata |
28260566 |
T |
|
| Q |
207 |
catgcattgtttaacatatatgtgatggtattatacatgttacacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtca |
306 |
Q |
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| T |
28260567 |
catgtattgtttaacatatatgtgatggtattatacatgttacacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtca |
28260666 |
T |
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| Q |
307 |
ttgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatct |
406 |
Q |
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| T |
28260667 |
gtgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatct |
28260766 |
T |
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| Q |
407 |
caagtttgtccagggatataacaat |
431 |
Q |
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| T |
28260767 |
caagtttgtccagggatataacaat |
28260791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 193 - 415
Target Start/End: Original strand, 29929557 - 29929783
Alignment:
| Q |
193 |
aattgttttgaatacatgcattgtttaacatatatgtgatggtattatacatgtt-acacattaagtcaccatgtttacgtaatattttatgcagtttaa |
291 |
Q |
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| T |
29929557 |
aattgctttaaatacatgcattgtttaacatatatatgatggtattatacatgtttacacattaagtcaccaagtttacataatattttatgcagtttaa |
29929656 |
T |
|
| Q |
292 |
aacttatgagagtcattgtggtatc---ttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaa |
388 |
Q |
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| T |
29929657 |
aacttatgagagtcattgtggtatcttattatcaacctatggaaggaaatactcaagagtctttgcttatatgtgcaatattggcatttttgaaaagcaa |
29929756 |
T |
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| Q |
389 |
atgattgcagtagtatctcaagtttgt |
415 |
Q |
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| T |
29929757 |
acgatttcagcagtatctcaagtttgt |
29929783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 29929336 - 29929510
Alignment:
| Q |
13 |
aatatcgatctcataggaaatattttgtttggagaaaagaagagatctgctatgatgttcgattttcgatcaactggtcaacctcttgtcgatgattggg |
112 |
Q |
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| T |
29929336 |
aatatccatctcataggaaatattttgtttggagaaaagaagagctccattatgatgtctgatttacgttcagctggtcaacctctaatcgatgattgga |
29929435 |
T |
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| Q |
113 |
actgtcttaaaatatttgtaagaaaaataacacaaaatattattagtattgccactttcttgaattttaagttag |
187 |
Q |
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| T |
29929436 |
actgtcttaaaatacttgtaagaagaataacacaaaatattattagtattgccactatcttgaattttaagttag |
29929510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 262 - 368
Target Start/End: Original strand, 11329102 - 11329208
Alignment:
| Q |
262 |
catgtttacgtaatattttatgcagtttaaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatg |
361 |
Q |
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||||||| | ||||||||||||||| | ||||||||||||||||| ||||||| | |||||| ||||||||||||||||| | |||||||||| ||||| |
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| T |
11329102 |
catgttttcttaatattttatgcaggtaaaaacttatgagagtcactgtggtaccctatcaagctatggaaggaaatacttgagagcctttgctaatatg |
11329201 |
T |
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| Q |
362 |
tgtaata |
368 |
Q |
| |
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||||||| |
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| T |
11329202 |
tgtaata |
11329208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 470831 - 470956
Alignment:
| Q |
290 |
aaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaa |
389 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| ||||||||||| || ||||||| | ||||| || | ||||||| |||||||||| |
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| T |
470831 |
aaaacttatgaacgtcattgtggtatcttatcaacacatggaatgaaatactcaagagtctttgctaacatgtgcaacgtcggcatttatgagaagcaaa |
470930 |
T |
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| Q |
390 |
tgattgcagtagtatctcaagtttgt |
415 |
Q |
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|||||||| | |||||||||||||| |
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| T |
470931 |
tgattgcaacaatatctcaagtttgt |
470956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 2288335 - 2288291
Alignment:
| Q |
95 |
ctcttgtcgatgattgggactgtcttaaaatatttgtaagaaaaa |
139 |
Q |
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||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
2288335 |
ctcttgtggatgattgggattgtcttaaaatgcttgtaagaaaaa |
2288291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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