View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13775_low_7 (Length: 450)
Name: NF13775_low_7
Description: NF13775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13775_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 14 - 435
Target Start/End: Complemental strand, 29626127 - 29625707
Alignment:
| Q |
14 |
catcaatggaattagaaattttcataatcaaacttaggccaattatataagcaagcaatatgcaaaatccaaatcagctcatcaatttttccaacacttc |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29626127 |
catcaaaggaattagaaattttcataatcaaacttaggccaattatataagcaagcaatatgcaaaatccaaatcagctcatcaatttttccaacacttc |
29626028 |
T |
|
| Q |
114 |
cccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaacacatcagatcaaaaataatgtgtccagtactccaggcttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29626027 |
cccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaacacatcagatcaaaaataatttgtccagtactccaggcttg |
29625928 |
T |
|
| Q |
214 |
cttagacaaatcaaaacacaaatcgatcttgctatcatccatgggataataaattagaatcagtacctcattaggtcccttcctattgcactgttgtcac |
313 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29625927 |
cttagac-aatcaaaacacaaatcgatcttgctatcatccgtgggatgataaattagaatcagtacctcattaggtcccttcctattgcactcttgtcac |
29625829 |
T |
|
| Q |
314 |
cacaaaatacctctccgtaaaacacattgatacagctgacaccctcctaatccaatccttgcatatcagattgctacaaactgtttcaattttctacctt |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29625828 |
cacaaaatacctctccgtgaaacacattgatacagctgacaccctccgaatccaatccttgcatatcagattgctacaaactgtttcaattttctacctt |
29625729 |
T |
|
| Q |
414 |
ccatatttgatccttgctatgt |
435 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29625728 |
ccatatttgatccttgctatgt |
29625707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University