View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13776_high_2 (Length: 447)

Name: NF13776_high_2
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13776_high_2
NF13776_high_2
[»] chr7 (5 HSPs)
chr7 (19-194)||(7655026-7655201)
chr7 (71-212)||(38603031-38603172)
chr7 (168-212)||(30969776-30969820)
chr7 (175-212)||(7754218-7754255)
chr7 (168-212)||(19267367-19267411)
[»] chr5 (1 HSPs)
chr5 (70-212)||(18345722-18345864)
[»] chr4 (2 HSPs)
chr4 (74-144)||(9521817-9521886)
chr4 (168-212)||(23499436-23499480)
[»] chr3 (1 HSPs)
chr3 (174-212)||(41417170-41417208)
[»] chr6 (1 HSPs)
chr6 (147-212)||(14536142-14536207)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 7655026 - 7655201
Alignment:
Q  19 ctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctctaaactaaacaattcactttagagtgtaaaatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655026 ctatttacaattttgttttccaccataaacatttacttattacctatgttccggatccggttcctctaaactaaacaattcactttagagtgtaaaatga 7655125  T
Q  119 gtagtatcaaaccattaagtaacaaactaaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaa 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655126 gtagtatcaaaccattaagtaacaaactaaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaa 7655201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 38603172 - 38603031
Alignment:
Q  71 ggatccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaa-ctaaggaagatatcgtaggcaagtc 169  Q
    |||||||| |||| |||| | | ||| ||||||||||||||||| ||| || |||||| || |||| ||| ||| | |||| |||||| ||||| |  |     
T  38603172 ggatccggctcctttaaaatgagcaactcactttagagtgtaaagtgaataatatcaa-ccgttaattaaaaaatcaaaggtagatattgtaggtacatt 38603074  T
Q  170 atgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    || |||||||| |||||||||| ||||||||||||| ||||||    
T  38603073 ataacaaatcatgagtttgttaaaataacaacccttgattttc 38603031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 30969820 - 30969776
Alignment:
Q  168 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||    
T  30969820 tcataacaaatcatgagtttgttacaataacaacccttgattttc 30969776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 7754218 - 7754255
Alignment:
Q  175 aaatcacgagtttgttacaataacaaccctttattttc 212  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  7754218 aaatcacgagtgtgttacaataacaacccttgattttc 7754255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 19267367 - 19267411
Alignment:
Q  168 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  19267367 tcataacaaatcatgagtttgttaaaataacaacccttgattttc 19267411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 18345864 - 18345722
Alignment:
Q  70 cggatccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaactaag-gaagatatcgtaggcaagt 168  Q
    ||||||||| ||||||||| | | ||||||||||||||||||||| || | | |||||| || |||| ||| |||  ||  | | |||| ||||| | ||    
T  18345864 cggatccggctcctctaaagtgagcaattcactttagagtgtaaagtgggcaatatcaa-ccgttaattaataaatgaaaagtatatattgtaggtacgt 18345766  T
Q  169 catgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    ||| |||||||| ||||||||| |||||||||||||| ||||||    
T  18345765 cataacaaatcatgagtttgttgcaataacaacccttgattttc 18345722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 9521817 - 9521886
Alignment:
Q  74 tccggttcctctaaactaaacaattcactttagagtgtaaaatgagtagtatcaaaccattaagtaacaaa 144  Q
    ||||| ||||||||| | || |||||||||||||||||||| |||||| |||| ||||||||| |||||||    
T  9521817 tccggctcctctaaagtgaataattcactttagagtgtaaagtgagtaatatc-aaccattaattaacaaa 9521886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 23499436 - 23499480
Alignment:
Q  168 tcatgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  23499436 tcataacaaatcatgagtttgttaaaataacaacccttaattttc 23499480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 41417208 - 41417170
Alignment:
Q  174 caaatcacgagtttgttacaataacaaccctttattttc 212  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  41417208 caaatcacgagtttgttacaataacaacccttgattttc 41417170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 14536207 - 14536142
Alignment:
Q  147 aaggaagatatcgtaggcaagtcatgacaaatcacgagtttgttacaataacaaccctttattttc 212  Q
    |||| |||||| ||||| |  |||| |||||||||||||||||| ||||||||||| || ||||||    
T  14536207 aaggtagatattgtaggtacatcataacaaatcacgagtttgttgcaataacaacctttgattttc 14536142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University