View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_high_4 (Length: 399)
Name: NF13776_high_4
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29364186 - 29364027
Alignment:
| Q |
1 |
tttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgaagagaaaattaccaagcaattgttgagaa |
100 |
Q |
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| T |
29364186 |
tttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgatgagaaaattaccaagcaattgttgagaa |
29364087 |
T |
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| Q |
101 |
agaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat |
160 |
Q |
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| T |
29364086 |
agaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat |
29364027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 29362871 - 29362743
Alignment:
| Q |
194 |
gtggttaatggacaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag |
293 |
Q |
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| T |
29362871 |
gtggttaatggacaataactctatgttcatgtgcctagaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag |
29362772 |
T |
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| Q |
294 |
aaaacatttttgcagcaagtatttgttta |
322 |
Q |
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| T |
29362771 |
aaaacatttttgcagcaagtatttgttta |
29362743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 24270287 - 24270233
Alignment:
| Q |
234 |
catatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgta |
288 |
Q |
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| T |
24270287 |
catatttatgtatagaatactatgcttttctatatatttgcagcacatttgtgta |
24270233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 29362951 - 29362910
Alignment:
| Q |
153 |
ttgatgattcagtaataacgaatctcttagttctatgagttg |
194 |
Q |
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| T |
29362951 |
ttgatgattcagtaataacgaatctctaagttctatgagttg |
29362910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 29351755 - 29351712
Alignment:
| Q |
241 |
atgtatagaatactatgcttttctgtatatttgcagcacatttg |
284 |
Q |
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| T |
29351755 |
atgtaaagaatactatgtttttctatatatttgcagcacatttg |
29351712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 29353809 - 29353713
Alignment:
| Q |
60 |
tatgtgtgttgaagagaaaattaccaagcaattgttgagaaagaaagttgattttttc--ggaaataagagagaaaaagttgaattctttttgttttg |
155 |
Q |
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| T |
29353809 |
tatgtgtgttgatgatataattacctagtagttgttgaggaagaaagtcgatttttttttggaaa-aggagagaaaaagtcgaattcttttcgttttg |
29353713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 29915444 - 29915476
Alignment:
| Q |
205 |
acaataactctatgttcatgtgcctgcaacata |
237 |
Q |
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| T |
29915444 |
acaataactctatgttcatgtgcctgtaacata |
29915476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 27753946 - 27753866
Alignment:
| Q |
205 |
acaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtata |
290 |
Q |
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| T |
27753946 |
acaataactctatgttcatgtgcctacaacatatttatgtatagaatacta-----ttctttatatttgcagcatatttgtgtata |
27753866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 27754192 - 27754121
Alignment:
| Q |
117 |
cggaaataagagagaaaaagttgaattctttttgtttt------gatgattcagtaataacgaatctcttag |
182 |
Q |
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| T |
27754192 |
cggaaataagagagaaaaagttgaattctttttgtttttgtttcgatgattcaataataatgaatctcttag |
27754121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 29358638 - 29358703
Alignment:
| Q |
88 |
caattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttt |
153 |
Q |
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| T |
29358638 |
caattgttgagagagaaagtttagttttttggaaaaaggagagagaaagttgaattctttttgttt |
29358703 |
T |
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