View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13776_low_1 (Length: 504)

Name: NF13776_low_1
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13776_low_1
NF13776_low_1
[»] chr6 (7 HSPs)
chr6 (19-295)||(5981184-5981460)
chr6 (343-420)||(5981508-5981585)
chr6 (429-501)||(5981618-5981690)
chr6 (382-420)||(5981631-5981669)
chr6 (436-470)||(15057112-15057146)
chr6 (436-474)||(24360490-24360528)
chr6 (440-480)||(5981547-5981587)
[»] chr4 (6 HSPs)
chr4 (83-236)||(13025548-13025701)
chr4 (436-483)||(11392395-11392442)
chr4 (436-470)||(35297496-35297530)
chr4 (450-483)||(11402144-11402177)
chr4 (444-484)||(6608362-6608402)
chr4 (440-480)||(9712953-9712993)
[»] chr7 (5 HSPs)
chr7 (440-484)||(42901366-42901410)
chr7 (440-471)||(46282894-46282925)
chr7 (436-470)||(17623273-17623307)
chr7 (429-466)||(6980892-6980929)
chr7 (439-480)||(46206689-46206730)
[»] chr8 (3 HSPs)
chr8 (444-480)||(43465103-43465139)
chr8 (436-471)||(31470841-31470876)
chr8 (436-473)||(7931548-7931585)
[»] chr1 (2 HSPs)
chr1 (438-470)||(44382433-44382465)
chr1 (436-480)||(48541265-48541309)
[»] chr3 (2 HSPs)
chr3 (436-470)||(53299825-53299859)
chr3 (438-470)||(26960937-26960969)
[»] chr2 (3 HSPs)
chr2 (436-474)||(20443260-20443298)
chr2 (437-470)||(18182529-18182562)
chr2 (436-468)||(1355990-1356022)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 5981184 - 5981460
Alignment:
Q  19 atccttgtctctatcattaaaagaattcttcaatgatttgaacctttggtaacattggttcaaatgtggatttgatgatgggtcagatgattcaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5981184 atccttgtctctatcattaaaagaattcttcaatgatttgaacctttggtaacattggttcaaatgtggatttgatgatgggtcagatgattcaaattca 5981283  T
Q  119 gcatgtataaggtttgacatgaatgcaaatttttgttctatttcttcttgtgaatttggatcacgtagtattccttcagtgagaattgattcgagttctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5981284 gcatgtataaggtttgacatgaatgcaaatttttgttctatttcttcttgtgaatttggatcacgtagtattccttcagtgagaattgattcgagttctt 5981383  T
Q  219 tgagttttgctttcaaaaccaattcatacattttttgagtgacacaaaggtttttgttttctgaagtttctgttact 295  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  5981384 tgagttttgctttcaaaaccaattcagacattttttgagtgacacaaaagtttttgttttttgaagtttctgttact 5981460  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 5981508 - 5981585
Alignment:
Q  343 aaaacggtctagaagttttctatttatacgtggtaaccgtagcacttgcgtggcattgaccaaccacaatatcacaag 420  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5981508 aaaacggtctagaagttttctatttataagtggtaaccgtagcacttgcgtgacattgaccaaccacaatatcacaag 5981585  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 429 - 501
Target Start/End: Original strand, 5981618 - 5981690
Alignment:
Q  429 gtttgtctgtacacttgtgatattgtggttggccaatgtcacccaaatgctatccggtaactgtaatctctgc 501  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5981618 gtttgtctgtacacttgtgatattgtggttggtcaatgtcacccaagtgctatccggtaactgtaatctctgc 5981690  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 5981669 - 5981631
Alignment:
Q  382 tagcacttgcgtggcattgaccaaccacaatatcacaag 420  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  5981669 tagcacttgggtgacattgaccaaccacaatatcacaag 5981631  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 15057112 - 15057146
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcac 470  Q
    ||||||||||||||||| |||||||||||||||||    
T  15057112 tgtacacttgtgatattttggttggccaatgtcac 15057146  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 24360490 - 24360528
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcacccaa 474  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  24360490 tgtacacttgtgatattgtggttgatcaatgtcacccaa 24360528  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Complemental strand, 5981587 - 5981547
Alignment:
Q  440 cacttgtgatattgtggttggccaatgtcacccaaatgcta 480  Q
    ||||||||||||||||||||| ||||||||| ||| |||||    
T  5981587 cacttgtgatattgtggttggtcaatgtcacgcaagtgcta 5981547  T

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Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 13025548 - 13025701
Alignment:
Q  83 tgtggatttgatgatgggtcagatgattcaaattcagcatgtataaggtttgacatgaatgcaaatttttgttctatttcttcttgtgaatttggatcac 182  Q
    ||||||||||||||||||| |||||||| ||||||||    |  |||||||| ||||||||||| |||||||||||| ||||| ||||||| |||| |||    
T  13025548 tgtggatttgatgatgggttagatgatttaaattcagtggctgcaaggtttgtcatgaatgcaagtttttgttctatgtcttcatgtgaatgtggaccac 13025647  T
Q  183 gtagtattccttcagtgagaattgattcgagttctttgagttttgctttcaaaa 236  Q
    ||| |||||| ||    || |||||||| | ||||||||||||||  |||||||    
T  13025648 gtattattccatcttcaagcattgattccacttctttgagttttgtcttcaaaa 13025701  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 483
Target Start/End: Original strand, 11392395 - 11392442
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcacccaaatgctatcc 483  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  11392395 tgtacacttgtgacattgtggttggccaatgtcacccaagtgctatcc 11392442  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Complemental strand, 35297530 - 35297496
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcac 470  Q
    ||||||||||||||||||||||||| |||||||||    
T  35297530 tgtacacttgtgatattgtggttggtcaatgtcac 35297496  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 11402144 - 11402177
Alignment:
Q  450 attgtggttggccaatgtcacccaaatgctatcc 483  Q
    ||||||||||||||||||||||||| ||||||||    
T  11402144 attgtggttggccaatgtcacccaagtgctatcc 11402177  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 484
Target Start/End: Complemental strand, 6608402 - 6608362
Alignment:
Q  444 tgtgatattgtggttggccaatgtcacccaaatgctatccg 484  Q
    ||||| ||| ||||||||||||||||||||| |||||||||    
T  6608402 tgtgacattatggttggccaatgtcacccaattgctatccg 6608362  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 480
Target Start/End: Original strand, 9712953 - 9712993
Alignment:
Q  440 cacttgtgatattgtggttggccaatgtcacccaaatgcta 480  Q
    ||||||||| ||||||||||| ||||||||||||| |||||    
T  9712953 cacttgtgacattgtggttggtcaatgtcacccaagtgcta 9712993  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 42901410 - 42901366
Alignment:
Q  440 cacttgtgatattgtggttggccaatgtcacccaaatgctatccg 484  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  42901410 cacttgtgatattgtggttggtcaatgtcatccaaatgctatccg 42901366  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 471
Target Start/End: Complemental strand, 46282925 - 46282894
Alignment:
Q  440 cacttgtgatattgtggttggccaatgtcacc 471  Q
    ||||||||||||||||||||||||||||||||    
T  46282925 cacttgtgatattgtggttggccaatgtcacc 46282894  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 17623273 - 17623307
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcac 470  Q
    ||||||||||||||||||||||| |||||||||||    
T  17623273 tgtacacttgtgatattgtggtttgccaatgtcac 17623307  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 466
Target Start/End: Complemental strand, 6980929 - 6980892
Alignment:
Q  429 gtttgtctgtacacttgtgatattgtggttggccaatg 466  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  6980929 gtttgtttgtacacttgtgacattgtggttggccaatg 6980892  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 480
Target Start/End: Original strand, 46206689 - 46206730
Alignment:
Q  439 acacttgtgatattgtggttggccaatgtcacccaaatgcta 480  Q
    ||||| |||| ||||||||||||||||||||||||| |||||    
T  46206689 acactcgtgacattgtggttggccaatgtcacccaagtgcta 46206730  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 480
Target Start/End: Complemental strand, 43465139 - 43465103
Alignment:
Q  444 tgtgatattgtggttggccaatgtcacccaaatgcta 480  Q
    ||||||||||||||||||||||||||||||| |||||    
T  43465139 tgtgatattgtggttggccaatgtcacccaagtgcta 43465103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 471
Target Start/End: Original strand, 31470841 - 31470876
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcacc 471  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31470841 tgtacacttgtgacattgtggttggccaatgtcacc 31470876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 7931585 - 7931548
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcaccca 473  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  7931585 tgtacacttgtgacattgtggttggtcaatgtcaccca 7931548  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 44382433 - 44382465
Alignment:
Q  438 tacacttgtgatattgtggttggccaatgtcac 470  Q
    |||||||||||||||||||||||||||||||||    
T  44382433 tacacttgtgatattgtggttggccaatgtcac 44382465  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 480
Target Start/End: Original strand, 48541265 - 48541309
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcacccaaatgcta 480  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||||    
T  48541265 tgtacacttgtgatattgtagttagccaatatcacctaaatgcta 48541309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 53299825 - 53299859
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcac 470  Q
    ||||||||||||| |||||||||||||||||||||    
T  53299825 tgtacacttgtgacattgtggttggccaatgtcac 53299859  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 470
Target Start/End: Original strand, 26960937 - 26960969
Alignment:
Q  438 tacacttgtgatattgtggttggccaatgtcac 470  Q
    ||||||||||| |||||||||||||||||||||    
T  26960937 tacacttgtgacattgtggttggccaatgtcac 26960969  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 474
Target Start/End: Complemental strand, 20443298 - 20443260
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtcacccaa 474  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  20443298 tgtacacttgtgatattgtggttgatcaatgtcacccaa 20443260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 18182562 - 18182529
Alignment:
Q  437 gtacacttgtgatattgtggttggccaatgtcac 470  Q
    |||||||||||| |||||||||||||||||||||    
T  18182562 gtacacttgtgacattgtggttggccaatgtcac 18182529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 1355990 - 1356022
Alignment:
Q  436 tgtacacttgtgatattgtggttggccaatgtc 468  Q
    ||||||||||||| |||||||||||||||||||    
T  1355990 tgtacacttgtgacattgtggttggccaatgtc 1356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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