View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_10 (Length: 283)
Name: NF13776_low_10
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 264
Target Start/End: Original strand, 55268761 - 55268996
Alignment:
| Q |
27 |
agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacggagcagaggagtacccccatcg |
126 |
Q |
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| T |
55268761 |
agaagaagaaacac--acaaaaacaaaaacgatatggctgaggaacgcactcctagagagtatgcaaccccatctaagaagcagaggagtacccccatcg |
55268858 |
T |
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| Q |
127 |
accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag |
226 |
Q |
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| T |
55268859 |
accccgttgacatccttaggtgttgtttggaatttgcatagtacctccaatgttgtttttaatccgtttaattactcactcacacttgaactaaaataag |
55268958 |
T |
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| Q |
227 |
tgggagttattagttcaacttcaattataaatggatta |
264 |
Q |
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| T |
55268959 |
tgggagttattagttcaacttcaattataaatggatta |
55268996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 29952537 - 29952612
Alignment:
| Q |
27 |
agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatcta |
102 |
Q |
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| T |
29952537 |
agaagaagaaacacacacaaaaacagaaacgatatagctgaggaacacactcttagagagtatgcaaccccatcta |
29952612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 25592429 - 25592353
Alignment:
| Q |
27 |
agaagaagaaacacacacaaaaacaaaaacgatatggttgaggaacgcactcctagagagtatgcaaccccatctac |
103 |
Q |
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| T |
25592429 |
agaagaagaaacgcatgcaataatagaaacgatatggctgaggaatacactcttagagagtatgccgccccatctac |
25592353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 25950296 - 25950348
Alignment:
| Q |
54 |
aacgatatggttgaggaacgcactcctagagagtatgcaaccccatctacgga |
106 |
Q |
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| T |
25950296 |
aacgatatgactgaggaacgcactcttaaagagtatgcaaccccttctacgga |
25950348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 25785530 - 25785490
Alignment:
| Q |
66 |
gaggaacgcactcctagagagtatgcaaccccatctacgga |
106 |
Q |
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| T |
25785530 |
gaggaacgcactcttaaagagtatgcaatcccatctacgga |
25785490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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