View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_11 (Length: 257)
Name: NF13776_low_11
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 34450949 - 34450828
Alignment:
| Q |
49 |
agaatttgctgcaattttcttaaaaaa-ttattggtaatgtaccttataattgtttgatatttcaccccattgaagaaaaaataactttagagtgcacat |
147 |
Q |
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| T |
34450949 |
agaatttgctgcaattttcttaaaaaaattattggtaatgtaccttataattgtttgatatttcaccccattgaagaaaaaataactttagagtgcacat |
34450850 |
T |
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| Q |
148 |
aatttgaagaatccatcaacac |
169 |
Q |
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| T |
34450849 |
actttgaagaatccatcaacac |
34450828 |
T |
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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 32742146 - 32742069
Alignment:
| Q |
173 |
caggagcggaactacgttcagtagtatgtgggctggtgcccccactatcttttcatttggtatacaaatatatagtat |
250 |
Q |
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| T |
32742146 |
caggggcggagctacgttgagtagtatgtgggctggtgcccccactatcttttcatttggtatacaaatatatagtat |
32742069 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 19473763 - 19473840
Alignment:
| Q |
173 |
caggagcggaactacgttcagtagtatgtgggctggtgcccccactatcttttcatttggtatacaaatatatagtat |
250 |
Q |
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| T |
19473763 |
caggggcggagctacgttcagtggtatgtgggctggtgcccccactatcttttcattcggtataccaatatatagtat |
19473840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 11832510 - 11832457
Alignment:
| Q |
197 |
tatgtgggctggtgcccccactatcttttcatttggtatacaaatatatagtat |
250 |
Q |
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| T |
11832510 |
tatgtgggctggtgcccccactatcttttcattcggtatataaatatatagtat |
11832457 |
T |
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