View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_15 (Length: 212)
Name: NF13776_low_15
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 45060786 - 45060899
Alignment:
| Q |
16 |
atattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaactttgtctcccaatacctccttcattgtcctgcac |
115 |
Q |
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| T |
45060786 |
atattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaactttgtct-ccaatacctccttcattgtcctgcac |
45060884 |
T |
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| Q |
116 |
agatcctcaaacgat |
130 |
Q |
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| T |
45060885 |
agatcctcaaacgat |
45060899 |
T |
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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 18622081 - 18621972
Alignment:
| Q |
17 |
tattcaccagtcaccaaacagcatggagaatccacaatcctatcagagacaactaccttttcaactttgtctcccaatacctccttcattgtcctgcaca |
116 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||| | ||||||||| |||||| | |
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| T |
18622081 |
tattcgccggtcaccaaacagcatggagaatcaacaatcctgtcagagacaactaccttctccactttatctcccaagatctccttcatgaccctgcaga |
18621982 |
T |
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| Q |
117 |
gatcctcaaa |
126 |
Q |
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| T |
18621981 |
gatcctcaaa |
18621972 |
T |
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