View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_17 (Length: 207)
Name: NF13776_low_17
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 5582198 - 5582383
Alignment:
| Q |
6 |
tcgactgaaatgaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
105 |
Q |
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| T |
5582198 |
tcgacagaaaagaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaaattcctatcgaagttcactat |
5582297 |
T |
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| Q |
106 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattag |
191 |
Q |
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| T |
5582298 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattag |
5582383 |
T |
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Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 18150098 - 18149913
Alignment:
| Q |
6 |
tcgactgaaatgaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
105 |
Q |
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| T |
18150098 |
tcgacagaaaagaataaatttagatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
18149999 |
T |
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| Q |
106 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattag |
191 |
Q |
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| T |
18149998 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattag |
18149913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 28374293 - 28374478
Alignment:
| Q |
6 |
tcgactgaaatgaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
105 |
Q |
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| T |
28374293 |
tcgacagaaaagaataaatttagatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
28374392 |
T |
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| Q |
106 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattag |
191 |
Q |
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| T |
28374393 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattag |
28374478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 28382115 - 28382300
Alignment:
| Q |
6 |
tcgactgaaatgaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
105 |
Q |
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| T |
28382115 |
tcgacagaaaagaataaatttagatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
28382214 |
T |
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| Q |
106 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattag |
191 |
Q |
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| T |
28382215 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtataaaaaaagaaattcgttgtatatacattag |
28382300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 33876634 - 33876819
Alignment:
| Q |
6 |
tcgactgaaatgaataaatttcgatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
105 |
Q |
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| T |
33876634 |
tcgacagaaaagaataaatttagatagtcctttttggctccggtggcgaatagatcaatgcattatgtcttcaagagaagttcctatcgaagttcactat |
33876733 |
T |
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| Q |
106 |
gaatcttttggtacctattatgaaatttatgggcattatttagtaataagaagtatnnnnnnngaaattcgttgtatatacattag |
191 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
33876734 |
gaattttttggtacctattatgaaatttatgggcaatatttagtaataagaagtataaaaaaaaaaatttgttgtatatacattag |
33876819 |
T |
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