View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_3 (Length: 446)
Name: NF13776_low_3
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 95 - 430
Target Start/End: Complemental strand, 42873432 - 42873085
Alignment:
| Q |
95 |
tagagttataccgtgtcatatctgtttgtataaattttggtttaaaaataacacaactccatacattgtacccnnnnnnnnnnncataactctatacata |
194 |
Q |
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| T |
42873432 |
tagagttataccgtatcatatctgtttgtataaattttggtttgaaaataacacaactccatacattgtaccaaaaaaaaaaaacataact--atacata |
42873335 |
T |
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| Q |
195 |
accatgattacttttcatattat----caacaatgatttaaaaatctctatttttaaatgtgctagcagtcaaaattattttgcacagtacaattttgcg |
290 |
Q |
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| T |
42873334 |
accatgattacttttcatattatatatcaacaatgatttaaaaatctctatttttaaatgtgctagcagtcaaaattattttgcacagtacaattttgcg |
42873235 |
T |
|
| Q |
291 |
agcccgttgatacaattatatagtatatatttgtcttggattcttagacatgcctcatgattatgcatatcctgactagttaacaaaaggaatattgaac |
390 |
Q |
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| T |
42873234 |
agcccgttgatacaattatatagtatatatttgtcttggattcttagacatgcctcatgattatgcatatcctgactagttaacaaaaggaatattgaac |
42873135 |
T |
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| Q |
391 |
tagagaaaa----------ttaatagttcccgcaccactgtttggtaact |
430 |
Q |
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| T |
42873134 |
tagagaaaattaaagaaaattaatagttcccgcaccactgtttggtaact |
42873085 |
T |
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