View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13776_low_4 (Length: 399)

Name: NF13776_low_4
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13776_low_4
NF13776_low_4
[»] chr6 (7 HSPs)
chr6 (1-160)||(29364027-29364186)
chr6 (194-322)||(29362743-29362871)
chr6 (234-288)||(24270233-24270287)
chr6 (153-194)||(29362910-29362951)
chr6 (241-284)||(29351712-29351755)
chr6 (60-155)||(29353713-29353809)
chr6 (205-237)||(29915444-29915476)
[»] chr5 (2 HSPs)
chr5 (205-290)||(27753866-27753946)
chr5 (117-182)||(27754121-27754192)
[»] chr7 (1 HSPs)
chr7 (88-153)||(29358638-29358703)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29364186 - 29364027
Alignment:
Q  1 tttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgaagagaaaattaccaagcaattgttgagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29364186 tttttgtcaaaatgagagagaatgtttgatttgaatttctgggttgatagtaaagggtgtatgtgtgttgatgagaaaattaccaagcaattgttgagaa 29364087  T
Q  101 agaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29364086 agaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttttgatgat 29364027  T

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Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 29362871 - 29362743
Alignment:
Q  194 gtggttaatggacaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag 293  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29362871 gtggttaatggacaataactctatgttcatgtgcctagaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtatatag 29362772  T
Q  294 aaaacatttttgcagcaagtatttgttta 322  Q
    |||||||||||||||||||||||||||||    
T  29362771 aaaacatttttgcagcaagtatttgttta 29362743  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 24270287 - 24270233
Alignment:
Q  234 catatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgta 288  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24270287 catatttatgtatagaatactatgcttttctatatatttgcagcacatttgtgta 24270233  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 194
Target Start/End: Complemental strand, 29362951 - 29362910
Alignment:
Q  153 ttgatgattcagtaataacgaatctcttagttctatgagttg 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  29362951 ttgatgattcagtaataacgaatctctaagttctatgagttg 29362910  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 29351755 - 29351712
Alignment:
Q  241 atgtatagaatactatgcttttctgtatatttgcagcacatttg 284  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||    
T  29351755 atgtaaagaatactatgtttttctatatatttgcagcacatttg 29351712  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 29353809 - 29353713
Alignment:
Q  60 tatgtgtgttgaagagaaaattaccaagcaattgttgagaaagaaagttgattttttc--ggaaataagagagaaaaagttgaattctttttgttttg 155  Q
    |||||||||||| || | ||||||| || | |||||||| |||||||| ||||||||   ||||| | |||||||||||| |||||||||| ||||||    
T  29353809 tatgtgtgttgatgatataattacctagtagttgttgaggaagaaagtcgatttttttttggaaa-aggagagaaaaagtcgaattcttttcgttttg 29353713  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 29915444 - 29915476
Alignment:
Q  205 acaataactctatgttcatgtgcctgcaacata 237  Q
    |||||||||||||||||||||||||| ||||||    
T  29915444 acaataactctatgttcatgtgcctgtaacata 29915476  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 27753946 - 27753866
Alignment:
Q  205 acaataactctatgttcatgtgcctgcaacatatttatgtatagaatactatgcttttctgtatatttgcagcacatttgtgtata 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||     |||| ||||||||||||| |||||||||||    
T  27753946 acaataactctatgttcatgtgcctacaacatatttatgtatagaatacta-----ttctttatatttgcagcatatttgtgtata 27753866  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 27754192 - 27754121
Alignment:
Q  117 cggaaataagagagaaaaagttgaattctttttgtttt------gatgattcagtaataacgaatctcttag 182  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||| |||||| |||||||||||    
T  27754192 cggaaataagagagaaaaagttgaattctttttgtttttgtttcgatgattcaataataatgaatctcttag 27754121  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 29358638 - 29358703
Alignment:
Q  88 caattgttgagaaagaaagttgattttttcggaaataagagagaaaaagttgaattctttttgttt 153  Q
    |||||||||||| |||||||| | ||||| ||||| | |||||| |||||||||||||||||||||    
T  29358638 caattgttgagagagaaagtttagttttttggaaaaaggagagagaaagttgaattctttttgttt 29358703  T

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