View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13776_low_6 (Length: 333)
Name: NF13776_low_6
Description: NF13776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13776_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 33121053 - 33121355
Alignment:
| Q |
12 |
caatatcttcttcctctccttctcttccagcaccaagtcactccccatttctctcttgcttcgatgaaagaggttttacggtctcccaagtctcaagctt |
111 |
Q |
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| T |
33121053 |
caatatcttcttcctctccttctcttccagcaccaagtcactccccatttctctcttgcttcgatgaaagaggttttacggtctcccaaatctcaagctt |
33121152 |
T |
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| Q |
112 |
ggcggattctattaaaagtagagatttaatattgaaaatagcaatttttaaacttataaacatttgaatatatgattcttgagacaaaattactatatat |
211 |
Q |
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| T |
33121153 |
ggcggtttctattaaaagtagagatttaatattgaaaatagcaatttttaaacttctaaacatttgaatatatgattcttgagacaaaattactatatat |
33121252 |
T |
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| Q |
212 |
agttactttcatatttctttttagaattgtatctccccaacattttcataagcgatacggtttggtttggattgcttgtgagacaaaaaatcattcaaac |
311 |
Q |
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||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33121253 |
agtta-----------ctttttagaattgtatctccccaatattttcataaacgatacggtttggtttggattggttgtgagacaaaaaatcattcaaac |
33121341 |
T |
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| Q |
312 |
aaaaaatttaaagg |
325 |
Q |
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|||||||||||||| |
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| T |
33121342 |
aaaaaatttaaagg |
33121355 |
T |
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