View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_10 (Length: 552)
Name: NF13777_high_10
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 5552759 - 5553295
Alignment:
| Q |
1 |
ttgttgcttgctttacaaacaaaacttacacaaaaaagtcaacaattatgaagtattagattagatttcctctgcttctgtgcaatgttacactcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5552759 |
ttgttgcttgctttacaaacaaaacttacacaaagaagtcaacaattatgaagtattagattagatttcctctgcttctgtgcaatgttacactcaacat |
5552858 |
T |
|
| Q |
101 |
tttttctgcacaaaaacttgctgaattcggttgctttgaaacgttattttctccttttgctttatcaagtgttgctcctatgacattttccggttaacat |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5552859 |
tttttctgcgcaaaaacttgctgaattcggttgctttgaaacgttattttctccttttgctttatcaagtgttgctcctatgacattttccgattaacat |
5552958 |
T |
|
| Q |
201 |
catgttaatttgctctaccacattctctattgatatctgtatgccatgaagattcaatag-nnnnnnnnnnnaaaagcaaacctaattctgaatactaac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
5552959 |
catgttaatttgctctaccacattctctattgatatctgtatgccatgaagattcaatagtttttttttttttaaagcaaacctaattctgaatactgac |
5553058 |
T |
|
| Q |
300 |
attgcctttcgactgaacttcggtttactaaggtccattcctccgggaaacagagttaaaacaaaaaatataccctcaactatagcacattagtgctttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5553059 |
attgcctttcgactgaacttcggtttactaaggtccgttcctccggg-aacaaagttaaaacaaaaaatataccctcaactatagcacattagcgctttt |
5553157 |
T |
|
| Q |
400 |
gttctgtatccagttaccagtatctgatactctagaactgttttaagaatgaaaaaggttaagggtcaagattcttcaacnnnnnnntgaaaagggtcaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
5553158 |
gttctgtatccagttaccagtatctgatactctagaactgttttaagaatgaaaaaggttaagggtcaagattcatcaacaaaaaaatgaaaaggatcaa |
5553257 |
T |
|
| Q |
500 |
gacattccccccacgtgtttgatttgttgaattgtatc |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5553258 |
gacattccccccacgtgtttgatttgttgaattgtatc |
5553295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University