View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_103 (Length: 227)
Name: NF13777_high_103
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_103 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 13299699 - 13299479
Alignment:
| Q |
6 |
aaatggaaactcttcttcctgcaccaacaatcactctcactcatctttaatcaatattaaccaagtaagattcttaagcttgtgttttattttcannnnn |
105 |
Q |
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| T |
13299699 |
aaatggaaactcttcttcctgcaccatcaatcaccctcactcatctttaatcaatattaaccaagtaagattcttaagcttgtgttttattttcattttt |
13299600 |
T |
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| Q |
106 |
nnnnctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaactgaggtgaaaattaagaatggga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13299599 |
ttt-ctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaactaaggtgaaaattaagaatggga |
13299501 |
T |
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| Q |
206 |
agagggaagattgtgattcgaa |
227 |
Q |
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|||||||||||||||||||||| |
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| T |
13299500 |
agagggaagattgtgattcgaa |
13299479 |
T |
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