View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_13 (Length: 543)
Name: NF13777_high_13
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 80 - 527
Target Start/End: Original strand, 13729311 - 13729758
Alignment:
| Q |
80 |
taaattatacttaagatttcattttgattgggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
179 |
Q |
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| T |
13729311 |
taaattatacttaagatttcattttgatttggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
13729410 |
T |
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| Q |
180 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
279 |
Q |
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| T |
13729411 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
13729510 |
T |
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| Q |
280 |
cggatgtttagtttctctgctcagcatttttagtttccctcttcaaaaacgcctatttcgcaacactcttcaccaccttttcccctctatctttctatag |
379 |
Q |
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| T |
13729511 |
cggatgtttagtttctctgctcagcatttttagtttccctcttcaaaaacgcctatttcgcaacactcttcaccactttttcccctctatctttctatag |
13729610 |
T |
|
| Q |
380 |
ctctctcacctactttgaattctctattactatgatgacaccagaatcattaatctacagcttcgtagtttgcgacaaaattgttgacatcgaatgtacc |
479 |
Q |
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| T |
13729611 |
ctctctcacctactttgaattctctattactatgatggcaccagaatcattaatctacaacttcgtagtttgcgaaaaaattgttgacatcgaatgtacc |
13729710 |
T |
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| Q |
480 |
gtcaccaaattaccctgtgaatttctcggcgtcatcaccatatagatg |
527 |
Q |
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| T |
13729711 |
gtcaccaaattaccctgtgaatttctcagagtcatcaccatatagatg |
13729758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13728865 - 13728935
Alignment:
| Q |
18 |
aaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaacttttaaattata |
88 |
Q |
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| T |
13728865 |
aaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattata |
13728935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 13728852 - 13728903
Alignment:
| Q |
49 |
agatttcaatgccaaaaattgttctaacttttaaattatacttaagatttca |
100 |
Q |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttca |
13728903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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