View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_17 (Length: 503)
Name: NF13777_high_17
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 216 - 488
Target Start/End: Complemental strand, 25393985 - 25393713
Alignment:
| Q |
216 |
tctcatcttatcttatgttgtacacacaaaagatgggaaatgaatgaattgaattaccattgcttgcattttgttacaatacattacatataacatgaat |
315 |
Q |
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| T |
25393985 |
tctcatcttatcttatgttgtacacacaaaagatgggaaatgaatgaattgaattaccattgcttgcattttgttacaatacattacatataacatgaat |
25393886 |
T |
|
| Q |
316 |
aaataaatatatatagatagctaggctaggctaaaatgggcaatgaaatagaattaaccaagagcactgaaacctcctcctttcatcatttgcttaaact |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25393885 |
aaataaatatatatagatagctaggctaggctaaaatgggcaatgaaatagaattaaccaagagcactgaaacctcctcctttcatcatttgcttaaact |
25393786 |
T |
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| Q |
416 |
ccttataattaaccataccatcaccatcaacatccaccttcataatcatcctcttacattcctcgacggttct |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25393785 |
ccttataattaaccataccatcaccatcaacatccaccttcataatcatcctcttacattcctcaacggttct |
25393713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 25394195 - 25394054
Alignment:
| Q |
6 |
atgaagccagagacattaagaacattttacaacgttccaccacccagaatactttacagaatataacatcaaaacaacaaaaaatggagacaccaaagtt |
105 |
Q |
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| T |
25394195 |
atgaagccaaagacattaagaacattttacaacgttccaccacccaaaatactttacagaatgtaacatcaaaacaacaaaaaatggagacaccaaagtt |
25394096 |
T |
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| Q |
106 |
gaaatgaaatgatcaaatagttaaccaagcctaacaaagtgg |
147 |
Q |
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| T |
25394095 |
gaaatgaaatgatcaaatagttaaccaagcctaacaaagtgg |
25394054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 449
Target Start/End: Original strand, 42339553 - 42339626
Alignment:
| Q |
376 |
agagcactgaaacctcctcctttcatcatttgcttaaactccttataattaaccataccatcaccatcaacatc |
449 |
Q |
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|||||| |||| || || || |||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
42339553 |
agagcagtgaatccaccacccttcatcatttgcttaaactccttataatcaaccaaaccatttccatcaacatc |
42339626 |
T |
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