View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_18 (Length: 502)
Name: NF13777_high_18
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 244 - 494
Target Start/End: Complemental strand, 11300144 - 11299893
Alignment:
| Q |
244 |
acacattcgataagaagaattggggctatagtgtattcaggctcatannnnnnnctacaccggcgtcacattcaaatatgtttt-aatttagttggatag |
342 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11300144 |
acacattcgatttgaagaattggggctatagtgtattcaggctcatattttttcctacaccggcgtcacattcaaatatgtttttaatttagttggatag |
11300045 |
T |
|
| Q |
343 |
atattttaattaaattcacggtcaaaattgtgattaattcaattacatattaaccataattttctatgtgattaaacaacgtacttgcgtgggtgtaggg |
442 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11300044 |
atgttttaattaaattcacggtcaaaattgtgattaattcaattacatattaaccacaattttcaatgtgattaaacaacgtacttgcgtaggtgtaggg |
11299945 |
T |
|
| Q |
443 |
aaaattggatgtacatgaaacatttttgtaatatcttacatgtgaaaatatt |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11299944 |
aaaattggatgtacatgaaacatttttgtaatatcttacatgtgaaaatatt |
11299893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 11300442 - 11300197
Alignment:
| Q |
1 |
tttctaacaaaccatgtgtccgtttccatgtttcaaaccttttggttacgaaattgttttcacaaaaaacacgagttactaatacttaatattatctggt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11300442 |
tttctaacaaaccatgtgtccgtgtccatgtttcaaacctttttgttacgaaattgttttcaccaaaaacacaagttactaatacttaatattatctggt |
11300343 |
T |
|
| Q |
101 |
tttgatttctgccgaagagactattcttttcgacaatattaatgatattcattaagacttacaaaaccatgacaccagatacaacatagaaacgaaacat |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
11300342 |
tttgatttctgccgaagagacgattcttttcgacaatattaatgatattcagtaagacttacaaaaccatgacaccggatacgacatagaaacgaaacat |
11300243 |
T |
|
| Q |
201 |
tgacacatataataatttaaaaatgacttagttcaatgtaataaca |
246 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
11300242 |
tgacacggataataattttaaaatgacttagttcattgtaataaca |
11300197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 404
Target Start/End: Complemental strand, 19297081 - 19297003
Alignment:
| Q |
326 |
ttaatttagttggatagatattttaattaaattcacggtcaaaattgtgattaattcaattacat-attaaccataattt |
404 |
Q |
| |
|
|||||||||||| |||||| || |||| ||||||||||||||||| || ||||||||| ||||| |||||||| ||||| |
|
|
| T |
19297081 |
ttaatttagttgaatagatggtt-aattcaattcacggtcaaaattctggttaattcaactacatgattaaccacaattt |
19297003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 3750691 - 3750634
Alignment:
| Q |
348 |
ttaattaaattcacggtcaaaattgtgattaattcaattaca-tattaaccataattt |
404 |
Q |
| |
|
|||||| |||||| ||||||| ||||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
3750691 |
ttaattcaattcaaggtcaaagttgtggttaattcaattacattattaaccacaattt |
3750634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 31120354 - 31120298
Alignment:
| Q |
348 |
ttaattaaattcacggtcaaaattgtgattaattcaattacatattaaccataattt |
404 |
Q |
| |
|
|||||| ||||||| || ||||||||||| |||||||||| ||||||| || ||||| |
|
|
| T |
31120354 |
ttaattcaattcactgttaaaattgtgataaattcaattatatattaatcacaattt |
31120298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University