View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_20 (Length: 494)
Name: NF13777_high_20
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 33315579 - 33316055
Alignment:
| Q |
1 |
agcatttgttatccattcagacgtgcatttggattttgaaccctaataggtggtggcctaactccaaccggtgctggatcaaaagttccttttccaattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
33315579 |
agcatttgttatccattcagacgtgcatttagattttgaaccctaataggtggtggcctaactccaataggtgctggatcaaaagttccttgtccaattc |
33315678 |
T |
|
| Q |
101 |
ctattggttgtggtacttgcacattcacatcaaataattgctcttgtgtttgtggggaagattgtgacaaatctaaaggaacttgttctccttgaccctc |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315679 |
ctattggttgtggtccttgcacattcacatcaaataattgctcttgtgtttgcggggaagattgtgacaaatctaaaggaacttgttctccttgaccctc |
33315778 |
T |
|
| Q |
201 |
attgttgggaggtggtggtggtggaacctaattgggaggcataggcatcacaccttgattagtgcagccgaacctattgttgttaccttctagaccagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
33315779 |
attgttgggaggtggtggtggtggaacctaattgggaggcataggcatcacagcttgattagtgcagccgaacctattgtggttaccttctagaccacac |
33315878 |
T |
|
| Q |
301 |
cttgaacatgttagcactggatatgacctctgaacattacttgaaccggaaggaccctcaaatgtatctttccttctttgtttctttggccttccaggtt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
33315879 |
cttgaacatgttagcactggatatgacctctgaacattacttgaaccggaaggaccctcaaatgcatctttccttgtttgtttctttggccttccaggtt |
33315978 |
T |
|
| Q |
401 |
gtcttctttttggtgcaggcaccggtttcacataatcatttttcccaaaactcttcaccttgtgttggctttatgaaa |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315979 |
gtcttctttttggtgcaggcaccggtttcacataat-atttttcccaaaactcttcaccttgtgttggctttatgaaa |
33316055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 38984360 - 38983883
Alignment:
| Q |
1 |
agcatttgttatccattcagacgtgcatttggattttgaaccctaataggtggtggcctaactccaaccggtgctggatcaaaagttccttttccaattc |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||| |
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| T |
38984360 |
agcatttgttgttcattcagacgtgcatttggagtttga-ccctaataggtggtggcctaactccaatcggtgctggatcaaaagttcactgtctaattc |
38984262 |
T |
|
| Q |
101 |
ctattggttgtggtacttgcacattcacatcaaataattgctcttgtgtttgtggggaagattgtgacaaatctaaaggaacttgttctccttgaccctc |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| | |||||||| | | |
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|
| T |
38984261 |
ctattggttgtggtccttgcacattcacatcaaataattgctcttgtgtttgtggggcaaattgtgacaaatctaaagcaacttcatttccttgactcgc |
38984162 |
T |
|
| Q |
201 |
attgttgggaggtggtggtggtggaacctaattgggaggcataggcatcacaccttgattagtgcagccgaacctattgttgttaccttctagaccagac |
300 |
Q |
| |
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||||||| || |||||||||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||| || |
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| T |
38984161 |
attgttgagacgtggtggtggagg---ccaatggggaggcatagacatcacaccttgattagtgcagcgaaacctattgtggctaccttctagaccacac |
38984065 |
T |
|
| Q |
301 |
cttgaacatgttagcactggatatgacctctgaacattacttgaaccggaaggaccctcaaatgtatctttccttctttgtttctttggccttccaggtt |
400 |
Q |
| |
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|||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||| ||||| |
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| T |
38984064 |
cttgaacatgtttgcactggatgtgaccttcagacattacttgaacaggaaggaccctcatatgcatatttccttctttgtttctttggccttcaaggtt |
38983965 |
T |
|
| Q |
401 |
gtcttctttttggtgcaggcaccggtttcacataatca--tttttcccaaaactcttcaccttgtgttggctttatgaaatg |
480 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38983964 |
gtcttctttttggtgcagtcaccggtttaacataattagttttttcccaaaactcttcaccttgtgttggcattatgaaatg |
38983883 |
T |
|
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