View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_21 (Length: 486)
Name: NF13777_high_21
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 222 - 486
Target Start/End: Complemental strand, 41238076 - 41237812
Alignment:
| Q |
222 |
gtccctgaattttttgatacagcacaatagtctttgacgttgatgacgttcaaaattaaacaatggtgtgacagtccatgcgagtttcaaatcgcttcca |
321 |
Q |
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| T |
41238076 |
gtccctgaattttttgatacagcacaatagtctttgacgttgatgacgtgcaaaattaaacaatggtgtgtcagtccatgcgagttttaaatcacttcca |
41237977 |
T |
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| Q |
322 |
ctttgaatctattgggaatgaattcaaaacgattgtactttgaacaactataaatgcaattatgttgtcaagggtttgaattgggaatttcctctgatcc |
421 |
Q |
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| T |
41237976 |
cattgaatctattgggaatgaattcaaaacgattgtactttgaacaactataaatgcaattatgttgtcaagggtttgaattgggaatttcctctgatcc |
41237877 |
T |
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| Q |
422 |
tagtttgataatgtttgttacccacttaaacatgatatattcgtcgtcccttccaccctccattt |
486 |
Q |
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| T |
41237876 |
tagtttgataatgtttgttacccacttaaacatgatatattcgttgtcccttccaccctccattt |
41237812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 41238315 - 41238094
Alignment:
| Q |
12 |
agtgagaagaattacgatcacctcataaagcttcttttgatcggagatagtggtaagttactcctttgcctcttctttcttgttttctcatagtgaggcc |
111 |
Q |
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| T |
41238315 |
agtgagaagaattacgatcacctcataaagcttcttttgatcggagatagtggtaagttactcctttgcctcttctttcttgttttctcatagtgaggcc |
41238216 |
T |
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| Q |
112 |
gatgtacttcagttttagaattcaatttttcaatcatgtactttgatcaattataaatgcaatattttgtcaagggttttgacttttgaatttgtacatt |
211 |
Q |
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| T |
41238215 |
gatgtactttagttttagaattcaatttttcaatcatgtactttgatcaattataaatgcaatattttgtcaagggttttgacttttgaatttgtacatt |
41238116 |
T |
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| Q |
212 |
gatcaatctagtccctgaattt |
233 |
Q |
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| T |
41238115 |
gatcaatctagtccctgaattt |
41238094 |
T |
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