View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_29 (Length: 431)
Name: NF13777_high_29
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Original strand, 38302393 - 38302794
Alignment:
| Q |
13 |
aatatcaacaacaacttcctcttgatcaatatggactccttcaagacattgtcccttccatgttcctcaacaggaccaatcacaactaatcattaatcaa |
112 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38302393 |
aatatcaacaacaacttcctcctgatcaatatggactccttcaagacattgtcccttccatgttcctcaacaggaccaatcacaactaatcattaatcaa |
38302492 |
T |
|
| Q |
113 |
gatccattcatatgtactctctttatctctctcaatcatcttttttgtacatatatttatatagtttaagtatgtaagttgcatagctagtttcatttag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38302493 |
gatccattcatatgtactctctttatctctctcaatcatcttttttgtacatatatttatatagtttaagtatgtaatttgcatagctagtttcatttag |
38302592 |
T |
|
| Q |
213 |
ttatgacttatcatgacatctagctatatatacatatatggccagctatgtgatggatggtaagtgggaactgtttttgttttcttaaggaaaaaatcat |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38302593 |
ttatgacttatcatgacatct-gctatatatacatatatggccagctatgtgatggatggtaagtgggaactgtttttgttttcttaaggaaaaaatcat |
38302691 |
T |
|
| Q |
313 |
cgagtacctatgtattaatcctagggagaggttatttagaggacaacatatctttttatacatatatgcatgcagcttggcagcccatttaattgggatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38302692 |
cgagtacctatgtattaatcctagggagaggttatttagaggacaacatatctttttatacatatatgcatgcagcttggcagcccatttaattgggatt |
38302791 |
T |
|
| Q |
413 |
ttc |
415 |
Q |
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||| |
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| T |
38302792 |
ttc |
38302794 |
T |
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