View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_high_33 (Length: 419)

Name: NF13777_high_33
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_high_33
NF13777_high_33
[»] chr2 (1 HSPs)
chr2 (18-410)||(35224790-35225185)
[»] chr8 (1 HSPs)
chr8 (237-300)||(9650831-9650894)
[»] chr5 (2 HSPs)
chr5 (238-297)||(24917727-24917786)
chr5 (238-297)||(24993637-24993696)
[»] chr4 (2 HSPs)
chr4 (233-310)||(26270906-26270983)
chr4 (222-310)||(55570873-55570960)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 35224790 - 35225185
Alignment:
Q  18 atttatatgttaacctttgtgatttctcattgcaaagctttatggatgtatgattggtgctttatagataaagacaatgaagccctatctatggcacgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35224790 atttatatgttaacctttgtgatttctcattgcaaagctttatggatgtatgattggtgctttatagataaagacaatgaagccctatctatggcacgca 35224889  T
Q  118 agcttaatagataactttgacatcatttcaatgtctttctggaattttaagatgctaatcaagttcgttcttcaattggaatg--tttgataacatatcn 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||     
T  35224890 agcttaatagataactttgacgtcatttcaatgtctttctggagttttaagatgctaatcaagttcgatcttcaattggaatgcatttgataacatatca 35224989  T
Q  216 nnnnnn-gggacaaatctgattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaattcaag 314  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35224990 agacaaagggacaaatctgattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaattcaag 35225089  T
Q  315 gaccaaaatatgtttataagttctgtaacatttggtagaaacaaaactaaagaaggtatataagactgtgtgagtgagtaagtaaagtacctatgc 410  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  35225090 gaccaaaatatgcttataagttctgtaacatttggtagaaacaaaactaaagaaggtatataagactgtgtgagtgagtgagtgaagtacctatgc 35225185  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 9650831 - 9650894
Alignment:
Q  237 aatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaa 300  Q
    ||||| ||||||||||| |||| |||||||| |||| ||||||||  || ||||||||||||||    
T  9650831 aatattttgcaattccatagacgattttggattattgataatgtggggggctaggttgatacaa 9650894  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 24917786 - 24917727
Alignment:
Q  238 atatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgata 297  Q
    |||| |||||||||||| || |||||||||||||| |||||  | |||||||||||||||    
T  24917786 atattttgcaattccagggatcattttggaatattgataatagggaggactaggttgata 24917727  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 24993696 - 24993637
Alignment:
Q  238 atatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgata 297  Q
    |||| |||||||||||| || |||||||||||||| |||||  | |||||||||||||||    
T  24993696 atattttgcaattccagggatcattttggaatattgataatagggaggactaggttgata 24993637  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 26270906 - 26270983
Alignment:
Q  233 gattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt 310  Q
    ||||||||| |||||||||||  || |||||||||||||| ||||||||   || ||| ||||||||||  |||||||    
T  26270906 gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatt 26270983  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 55570960 - 55570873
Alignment:
Q  222 gggacaaatctgattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt 310  Q
    |||||||  |||||||| || |||||||||   | | ||||||| |||||| |||||||| |||||||||||||||| || ||||||||    
T  55570960 gggacaagcctgattaacattttgcaattcactaaatcattttgaaatattaataatgtg-aggactaggttgataccatcctacaatt 55570873  T

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