View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_38 (Length: 387)
Name: NF13777_high_38
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 36283221 - 36283589
Alignment:
| Q |
1 |
aggctaataaagaatcaaatgatttagacttcttccgtcgattccacatggagattgtttgatataatggattttatgaacaaaacaaactgcgtttttc |
100 |
Q |
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| T |
36283221 |
aggctaataaagaatcaaatgatttagacttcttccgtcgattccacatggagaatgtttgatataatggattttatgaacaaaacaaactgcgtttttc |
36283320 |
T |
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| Q |
101 |
ttgctgtctttttccacacttaatgaagtggtatatgtgatgatataatatgcacataagtcatacatatttgattgattatattttacattggttccta |
200 |
Q |
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| T |
36283321 |
ttgctgtcattttccacacttaatgaagtggtatatgtgatgatataatatgcacataagtcatacatatttgattgattatatttgacattggttcctt |
36283420 |
T |
|
| Q |
201 |
ctaattcttctttgttccattcaagtactgcatgcaaaaatagcttcatcaacttgaagttcggtaaaaactcatttcatttcatctattggtttacggg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283421 |
ctaattcttctttgttccattcaagtactgcatgcaaaaatagcttcatcaacttgaagttcggtaaaaactcatttcatttcatctattggtttacggg |
36283520 |
T |
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| Q |
301 |
cctctttagattcacttatttgaacttttatacttgcataagtatttatgagactgattaggagaattt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36283521 |
cctctttagattcacttatttgaacttttatacttgcataagtatttatgagactctttaggagaattt |
36283589 |
T |
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