View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_high_45 (Length: 373)

Name: NF13777_high_45
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_high_45
NF13777_high_45
[»] chr6 (2 HSPs)
chr6 (6-366)||(2328616-2328976)
chr6 (10-255)||(14264683-14264928)
[»] chr5 (3 HSPs)
chr5 (6-210)||(25834850-25835054)
chr5 (53-171)||(31201610-31201728)
chr5 (135-245)||(41349259-41349369)
[»] chr7 (2 HSPs)
chr7 (6-239)||(20621812-20622045)
chr7 (6-239)||(20602823-20603056)
[»] chr4 (1 HSPs)
chr4 (9-247)||(17183163-17183401)
[»] chr3 (1 HSPs)
chr3 (133-250)||(25794373-25794490)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 2328616 - 2328976
Alignment:
Q  6 atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328616 atgtcaagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc 2328715  T
Q  106 cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328716 cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat 2328815  T
Q  206 caaagctgttcttgttgatccagttccaatttgatcattaatttttatgttttgtgctttatgtttcaagtttgaattagaaaaatgcatgtgtgcttta 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2328816 caaagctgttcttgttgatccagttccaatttgatcattaatttttatgttttgtgctttatgtttcaagtttgaattagaaaaatgcatgtgtgcttta 2328915  T
Q  306 tgtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatacctatgctt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2328916 tgtgctgcttggttcacaatatttgaacaatttatgctattttgatgtaatatctaggctt 2328976  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 14264928 - 14264683
Alignment:
Q  10 ctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtt 109  Q
    |||||||||||||||||||||||||| |||||  | ||||||| |||||||||| | ||||    |||||||| ||||||||| |||||||||||   ||    
T  14264928 ctagggaagctgctattcaagaatgccaaaagagagttgcaatcgcttggaaagatataaacaaagaatgtctaaggccaaccgaagttccaatggattt 14264829  T
Q  110 tctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaa 209  Q
    |||||| |||||||||||  || ||||||||||||||||  |||||| |||| |||||||||| || | |  |||||| || |||||  |||| || |||    
T  14264828 tctaactcgcgctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgttgaaggtctcatgaaaacatacattaaa 14264729  T
Q  210 gctgttcttgttgatccagttccaatttgatcattaatttttatgt 255  Q
    |  || || || |||||| ||||||||||| ||| ||| |||||||    
T  14264728 gacgtcctggtggatccaattccaatttgagcatcaatgtttatgt 14264683  T

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Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 25834850 - 25835054
Alignment:
Q  6 atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc 105  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||||    
T  25834850 atgtctagggaagctgctattcaagaatgccataagggaattgcaattgcttggaaagatataaatgaggaatgtcttaggccaaccaaagttccaatgc 25834949  T
Q  106 cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat 205  Q
    | ||||| |  || ||||||||  || ||||||||||||||||   |||||||||| |||| || ||||||| |||||||||||| ||||||  |||| |    
T  25834950 cttttcttattcgtgctctcaatttttcgcgttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaagaaatatgt 25835049  T
Q  206 caaag 210  Q
    |||||    
T  25835050 caaag 25835054  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 31201610 - 31201728
Alignment:
Q  53 tgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtt 152  Q
    ||||||||||| | | |||  ||||||| |||| |||||  ||||||||||||| ||||| || |||  ||| || ||  | |||||||||||||| |||    
T  31201610 tgcttggaaagatatgaataaggaatgttttagaccaactgaagttccaatgccttttcttacacgcattctaaatctgtcacgttttatggatgtcgtt 31201709  T
Q  153 tacaaagatgaagataact 171  Q
    || |||||| |||||||||    
T  31201710 tataaagataaagataact 31201728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 41349369 - 41349259
Alignment:
Q  135 cgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatccagttccaa 234  Q
    ||||| |||||||| ||||| |||||| |||||||||  |||| | ||||||||  |||||||||||  || ||| || | ||||||||||| || || |    
T  41349369 cgtttcatggatgtggtttataaagataaagataactttacacatcctgaaggagaaatgaagtcattcattaaatctttacttgttgatcccgtgccta 41349270  T
Q  235 tttgatcatta 245  Q
    ||||| |||||    
T  41349269 tttgagcatta 41349259  T

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Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 20622045 - 20621812
Alignment:
Q  6 atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc 105  Q
    ||||| || ||||||||||||||||||||||||||   |||  |||||| |||||||| | |||||   |||||||||||||||||||||||||||||||    
T  20622045 atgtcgagagaagctgctattcaagaatgcaaaaatagaatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgc 20621946  T
Q  106 cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat 205  Q
    | ||| | ||  | | ||| |||||| |||||||||||||||| ||||||||| | |||||||||||||||  |||| |  ||||||||||| | | |||    
T  20621945 cttttatgacttgtgttcttaacctttcgcgttttatggatgttgtttacaaaaacgaagataactacacagattctaacagactaatgaagacttgtat 20621846  T
Q  206 caaagctgttcttgttgatccagttccaatttga 239  Q
     ||||  ||  | |||||||| ||||||||||||    
T  20621845 taaagaagtgttggttgatcctgttccaatttga 20621812  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 20603056 - 20602823
Alignment:
Q  6 atgtctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgc 105  Q
    |||||||| ||||||||||||||||||||||||||   |||  |||||| |||||||| | |||||   |||||||||||||||||||||||||||||||    
T  20603056 atgtctagagaagctgctattcaagaatgcaaaaatagaatgacaattgtttggaaagatataaatgaagaatgtcttaggccaaccaaagttccaatgc 20602957  T
Q  106 cgtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatat 205  Q
    | ||| | |   | | |||||| ||| ||||||||||||||||  |||||||| |  |||||||||||||   |||| | |||||||||||| ||| |||    
T  20602956 cttttatgatttgtgttctcaatctttcgcgttttatggatgttatttacaaaaacaaagataactacacggattctaacggactaatgaagacatttat 20602857  T
Q  206 caaagctgttcttgttgatccagttccaatttga 239  Q
     ||||  ||  | |||||||| ||||||||||||    
T  20602856 taaagaagtgttggttgatcctgttccaatttga 20602823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 17183163 - 17183401
Alignment:
Q  9 tctagggaagctgctattcaagaatgcaaaaaggaaattgcaattgcttggaaagttgtaaattcggaatgtcttaggccaaccaaagttccaatgccgt 108  Q
    ||||| |||||| |||||||||||||| ||||   | |||  | ||||||||||| | |||||   |||||||||| ||||||||||||||||| ||  |    
T  17183163 tctagagaagcttctattcaagaatgccaaaaaagagttgttaatgcttggaaagatataaatgaagaatgtcttaagccaaccaaagttccaacgcttt 17183262  T
Q  109 ttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaa 208  Q
    ||||||| |||  | |||| ||  ||||||||||||||||| |||| ||  ||||||| |||||||| | |||| |||||  ||||||| |||| || ||    
T  17183263 ttctaactcgcattgtcaatctctcgcgttttatggatgtaatttataagcatgaagacaactacacgcattctaaaggagaaatgaagacatacattaa 17183362  T
Q  209 agctgttcttgttgatccagttccaatttgatcattaat 247  Q
    |||| | ||||| ||||| || ||||||||| |||||||    
T  17183363 agctttgcttgtagatccggtgccaatttgagcattaat 17183401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 25794373 - 25794490
Alignment:
Q  133 cgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatcaaagctgttcttgttgatccagttcc 232  Q
    ||||||||||||| |||||||| |||||| ||||||||| ||| |   ||||||||  ||||||| |||  || |||||| | ||||| ||||||||       
T  25794373 cgcgttttatggacgtagtttataaagataaagataacttcactcacactgaaggagaaatgaagacattcattaaagctttgcttgtagatccagtgtt 25794472  T
Q  233 aatttgatcattaatttt 250  Q
    ||||||||||||||||||    
T  25794473 aatttgatcattaatttt 25794490  T

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