View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_high_47 (Length: 362)

Name: NF13777_high_47
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_high_47
NF13777_high_47
[»] chr4 (1 HSPs)
chr4 (10-362)||(24480922-24481274)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 24480922 - 24481274
Alignment:
Q  10 acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24480922 acatcatcaagattagcaacaacaaatacgaaactatatatcagtatatgaaatttgataaaacagattaaaatacgcttctgaaataacacttatacaa 24481021  T
Q  110 aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481022 aatgatacaacatggagtccaaagcatagctttattacagagcagacttttattactaatgaaaactttattgcaatacaaacaacacaacaatgatcat 24481121  T
Q  210 agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481122 agtataactattggaaggagtcaaaatgcatatgtcatcaagcttaatacacagggggtggaggtgaactatattggtagggcttatatggtgtaggtgg 24481221  T
Q  310 ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtgggg 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481222 ggatttgtaaacgtaaggaggagatttataaacatagggagcgggtggtgggg 24481274  T

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