View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_50 (Length: 356)
Name: NF13777_high_50
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_50 |
 | |
|
| [»] scaffold0105 (5 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold1330 (1 HSPs) |
| | |
|
| [»] scaffold0496 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 28 - 340
Target Start/End: Complemental strand, 7458417 - 7458105
Alignment:
| Q |
28 |
cagagaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttggg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7458417 |
cagagaacatcatcaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttggg |
7458318 |
T |
|
| Q |
128 |
acccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7458317 |
acccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacctt |
7458218 |
T |
|
| Q |
228 |
tcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattata |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7458217 |
tcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatcagcattata |
7458118 |
T |
|
| Q |
328 |
caatacatttttt |
340 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7458117 |
caatacatttttt |
7458105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 340
Target Start/End: Complemental strand, 7412339 - 7412026
Alignment:
| Q |
28 |
cagagaacatcatcaa-catcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgg |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7412339 |
cagagaacatcatcaaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttgg |
7412240 |
T |
|
| Q |
127 |
gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7412239 |
gacccaagcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacct |
7412140 |
T |
|
| Q |
227 |
ttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattat |
326 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7412139 |
ttcattgaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatcagcattat |
7412040 |
T |
|
| Q |
327 |
acaatacatttttt |
340 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7412039 |
acaatacatttttt |
7412026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 13031461 - 13031387
Alignment:
| Q |
31 |
agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattcca |
105 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||| ||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
13031461 |
agaacaacatcaacatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagttgattcca |
13031387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 7419361 - 7419439
Alignment:
| Q |
31 |
agaacatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgt |
109 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||| ||||||||||||| || |||||||||||| |||||||||||| |
|
|
| T |
7419361 |
agaacaacatcaatatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagctgattccattgt |
7419439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 38 - 340
Target Start/End: Original strand, 3433 - 3735
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3433 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
3532 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
3533 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
3632 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| ||||||| | ||||| ||| ||||||||||| |
|
|
| T |
3633 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat |
3730 |
T |
|
| Q |
336 |
ttttt |
340 |
Q |
| |
|
||||| |
|
|
| T |
3731 |
ttttt |
3735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 35659 - 35357
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
35659 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
35560 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
35559 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
35460 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| ||||||| | ||||| ||| ||||||||||| |
|
|
| T |
35459 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat |
35362 |
T |
|
| Q |
336 |
ttttt |
340 |
Q |
| |
|
||||| |
|
|
| T |
35361 |
ttttt |
35357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 49259 - 48957
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
49259 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
49160 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
49159 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
49060 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| ||||||| | ||||| ||| ||||||||||| |
|
|
| T |
49059 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat |
48962 |
T |
|
| Q |
336 |
ttttt |
340 |
Q |
| |
|
||||| |
|
|
| T |
48961 |
ttttt |
48957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 302
Target Start/End: Original strand, 15580 - 15844
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
15580 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
15679 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| || || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
15680 |
tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
15779 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttactt |
302 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
15780 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt |
15844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 340
Target Start/End: Original strand, 9515 - 9817
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
9515 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
9614 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
9615 |
tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
9714 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| ||||||| | ||||| ||| ||||||||||| |
|
|
| T |
9715 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat |
9812 |
T |
|
| Q |
336 |
ttttt |
340 |
Q |
| |
|
||||| |
|
|
| T |
9813 |
ttttt |
9817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 340
Target Start/End: Original strand, 3320 - 3622
Alignment:
| Q |
38 |
catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat |
137 |
Q |
| |
|
|||||||||||||||||| | ||| ||| |||||| | |||| || |||| ||||| ||||||||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3320 |
catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat |
3419 |
T |
|
| Q |
138 |
tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt |
237 |
Q |
| |
|
||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
3420 |
tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt |
3519 |
T |
|
| Q |
238 |
ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat |
335 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||||||| ||||||| | ||||| ||| ||||||||||| |
|
|
| T |
3520 |
agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat |
3617 |
T |
|
| Q |
336 |
ttttt |
340 |
Q |
| |
|
||||| |
|
|
| T |
3618 |
ttttt |
3622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 99 - 340
Target Start/End: Complemental strand, 1997 - 1756
Alignment:
| Q |
99 |
gattccattgtatcgctctttcatttgggacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctcc |
198 |
Q |
| |
|
||||||||||| | ||| ||||||||||| ||||||||||||||||| ||| | || ||||| || |||||||| ||||| | ||| |||||| |
|
|
| T |
1997 |
gattccattgtggctctccttcatttgggatccaagcattgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctcc |
1898 |
T |
|
| Q |
199 |
acatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactttttt |
298 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| ||| |
|
|
| T |
1897 |
gcatgctcgaaaggctaatccccaaccattcatcgaagtagcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttcttt |
1798 |
T |
|
| Q |
299 |
acttcctttgttg--cgtaatcagcattatacaatacatttttt |
340 |
Q |
| |
|
|||| ||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
1797 |
actt--tttgttgtccataatctgcagcatacaatacatttttt |
1756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 340
Target Start/End: Complemental strand, 3123 - 2954
Alignment:
| Q |
171 |
gacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaaccca |
270 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||| ||||| |||| ||||||||| |||| || || |||||||||||||| ||||||||| | ||||| |
|
|
| T |
3123 |
gacctccaagaaataatagtttatctccacatgatcgaaatgctagtccccaaccattcaccgatgtagcttgctcaggaaagcttccaatgatgaccca |
3024 |
T |
|
| Q |
271 |
agagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattatacaatacatttttt |
340 |
Q |
| |
|
| |||| |||| ||||| |||||| |||||||| | | || | ||||| ||| |||||||||||||||| |
|
|
| T |
3023 |
atagttgttgtctttatcatacttctttacttcttgttttccataatctgcagcatacaatacatttttt |
2954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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