View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_51 (Length: 354)
Name: NF13777_high_51
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 338
Target Start/End: Original strand, 40674976 - 40675299
Alignment:
| Q |
15 |
actgctcaaacctataacaatttctccaaaaattaagatttggtgtatgcatgttaatcttgtaatgaaaaatatttcagtttagatttctaatattttn |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |
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| T |
40674976 |
actgctcaaacctataacaatttctccaaaaattaagatttggtgtatgcatgttaatcttgtaatgaaaaatatttcagtttaaaattctaata-tttt |
40675074 |
T |
|
| Q |
115 |
nnnnnnnnnnnnnnnnnnnnnngaagataatttcaatagtagtaattcttttaaaaatgtaaccataactttatttatatctatttgcatgaacaaataa |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40675075 |
taaaaaatctctaaaaaaaaaagaagataatttcaatagtagcaattcttttaaaaatgtaaccataactttatttatatctatttgcatgaacaaataa |
40675174 |
T |
|
| Q |
215 |
tatcagcttctcattcctaatttaacgttgaaccataagctag-tggtcacattttttggaatccttttactttctctctccttctctttggtctccatg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40675175 |
tatcagcttctcattcctaatttaacgttgaaccataagctagttggtcacattttttggaatccttttactttctctctccttctctttggtctccatg |
40675274 |
T |
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| Q |
314 |
aattttgcagcaaccatgaacatta |
338 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40675275 |
aattttgcagcaaccatgaacatta |
40675299 |
T |
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