View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_53 (Length: 351)
Name: NF13777_high_53
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_53 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 112 - 351
Target Start/End: Complemental strand, 37142499 - 37142260
Alignment:
| Q |
112 |
ttcaagaaagtcaaagttcaaccatccgacaaagttattttctggatgattgatatgagaatatatcaaaacaatcatctagatatcataccgaaggtca |
211 |
Q |
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| T |
37142499 |
ttcaagaaagttaaagttcaaccatccgataaagttattttctagatgattgatacgagaatatatcaaaacaatcatctagatatcataccgaagatca |
37142400 |
T |
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| Q |
212 |
cacaacaagctctaatggaacaacaactcattgatcttaaaatacgattgaatgcttctctcaaaagccccttatctttcagaatccactcttagcccaa |
311 |
Q |
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| T |
37142399 |
cacaacaaactctaatggaacaacaactaattgatcttcaaatacaattgagtgattctctaaaaagccccttatctttaagaatccactcttagacaaa |
37142300 |
T |
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| Q |
312 |
agagagacaacatatcgttatactgtgtcatacaaatcca |
351 |
Q |
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| T |
37142299 |
agagagacaacatatagttatactatgtcatacaaatcca |
37142260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 37142614 - 37142574
Alignment:
| Q |
39 |
gataaattgatcaagtctaaaggaagccaacaacgaatcat |
79 |
Q |
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| T |
37142614 |
gataaattgatcaagtctaaaggaaaccaacaacgaatcat |
37142574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 37142549 - 37142514
Alignment:
| Q |
79 |
taatagaatgaagccatcatctggatatgacaattc |
114 |
Q |
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| T |
37142549 |
taatagaatgaagccatcatctggatatgacaattc |
37142514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 53088521 - 53088600
Alignment:
| Q |
117 |
gaaagtcaaagttcaaccatccgacaaagttattttctggatgattgatatgagaatatatcaaaacaatcatctagata |
196 |
Q |
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| T |
53088521 |
gaaagtcaaagtttaaccatttgaaaaagttattctctcgatgattcatacaagaagatatcaaaacaatcatcttgata |
53088600 |
T |
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