View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_high_58 (Length: 340)

Name: NF13777_high_58
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_high_58
NF13777_high_58
[»] chr7 (10 HSPs)
chr7 (13-321)||(18924212-18924517)
chr7 (140-321)||(34727294-34727475)
chr7 (140-321)||(34730452-34730633)
chr7 (140-321)||(34735051-34735232)
chr7 (16-80)||(34715667-34715731)
chr7 (140-321)||(18929251-18929432)
chr7 (16-83)||(18929118-18929185)
chr7 (141-184)||(34721114-34721157)
chr7 (16-83)||(34730699-34730766)
chr7 (16-83)||(34735298-34735365)
[»] chr4 (13 HSPs)
chr4 (141-180)||(4333817-4333856)
chr4 (141-204)||(6547564-6547627)
chr4 (141-204)||(6814017-6814080)
chr4 (141-180)||(4322800-4322839)
chr4 (141-204)||(6500009-6500072)
chr4 (141-184)||(6624110-6624153)
chr4 (141-204)||(6649298-6649361)
chr4 (141-184)||(6751090-6751133)
chr4 (141-204)||(6794687-6794750)
chr4 (142-184)||(6756709-6756751)
chr4 (141-178)||(4343207-4343244)
chr4 (141-177)||(4135482-4135518)
chr4 (141-189)||(6834411-6834459)
[»] chr6 (1 HSPs)
chr6 (149-205)||(5075404-5075460)
[»] scaffold0373 (1 HSPs)
scaffold0373 (141-204)||(11553-11616)
[»] chr8 (1 HSPs)
chr8 (50-83)||(3313198-3313231)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 18924212 - 18924517
Alignment:
Q  13 catcaattggatgctttgtgcataagtcgcaaatggtttggtcaaggaagtataataatcatcacaacaaggcttaattatatgcttaatgattatcgag 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||   |||||||    
T  18924212 catcaattggatgctttgtgcataagttgcaaatggtttggtcaaggaagtataataatcatcacaacaagacatagttatatgctttat---tatcgag 18924308  T
Q  113 tttataaaatggaaccgatgaacatacatgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924309 tttataaaatggaaccgatgaacatacatgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttc 18924408  T
Q  213 tagagaagttgttatgaactgtcatggattgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924409 tagagaagttgttatgaactgtcatggattgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgta 18924508  T
Q  313 ttagagaaa 321  Q
    |||||||||    
T  18924509 ttagagaaa 18924517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 34727475 - 34727294
Alignment:
Q  140 atgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttctagagaagttgttatgaactgtcatgg 239  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||| |||| ||||| |||||||||||  || ||||||||| ||| |   ||    
T  34727475 atgaatctcttgagctttttagttggcatgcattcaagcaaccaattcctatagaaggttttggtgacctttctaccgatgttgttatgtactctggggg 34727376  T
Q  240 attgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgtattagagaaa 321  Q
    ||||||  ||  |||| ||||||||||||||||||||||||| | | ||||||||| ||||||||| |||||||| ||||||    
T  34727375 attgcctatagctcttcaagtcattgggtcctttttgttgaccaggcgaaggaaaaaagagtggaagagtgtattggagaaa 34727294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 34730633 - 34730452
Alignment:
Q  140 atgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttctagagaagttgttatgaactgtcatgg 239  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||| |||||| |||| ||||| |||||||||||  || ||||||| | ||| |   ||    
T  34730633 atgaatctcttgagcttttcagttggcatgtattcaagcaaccaattcctatagaaggttttggtgacctttctactgatgttgttaagtactctggggg 34730534  T
Q  240 attgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgtattagagaaa 321  Q
    || |||  ||  |||||||||||||||||||||||||||||||| | |||| |||| ||||||||| ||| |||| ||||||    
T  34730533 atcgcctctagctcttgaagtcattgggtcctttttgttgactaggcgaagcaaaaaagagtggaagagtatattggagaaa 34730452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 321
Target Start/End: Complemental strand, 34735232 - 34735051
Alignment:
Q  140 atgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttctagagaagttgttatgaactgtcatgg 239  Q
    |||||||||||||||||||||||| | |||||||||| ||||||| |||||| |||| ||||| ||| |||||||  || ||||||| | ||| |   ||    
T  34735232 atgaatctcttgagctttttagttggcatgcattcaaacaaccaattcctatagaaggttttggtgagctttctactgatgttgttaagtactctagggg 34735133  T
Q  240 attgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgtattagagaaa 321  Q
    ||||||  ||  |||| ||||||||||||||||||||||||| | | |||| |||| || ||||||  ||||||| ||||||    
T  34735132 attgcctctagctcttcaagtcattgggtcctttttgttgaccaggcgaagaaaaaaagtgtggaagcgtgtattggagaaa 34735051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34715731 - 34715667
Alignment:
Q  16 caattggatgctttgtgcataagtcgcaaatggtttggtcaaggaagtataataatcatcacaac 80  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34715731 caattgggtgctttgtgcataagacgcaaatggtttggtcaaggaagtataataatcatcacaac 34715667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 140 - 321
Target Start/End: Original strand, 18929251 - 18929432
Alignment:
Q  140 atgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctgacctttctagagaagttgttatgaactgtcatgg 239  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||  ||| ||| | | ||||||||| ||| ||||| | | ||| |   ||    
T  18929251 atgaatctcttgagctttttagttggcatgcattcaagcaaccaaatcctataaaaggtttcggtaacctttctacagatgttgtcaagtactctggggg 18929350  T
Q  240 attgccgttaagtcttgaagtcattgggtcctttttgttgactacgagaaggaaaacagagtggaacagtgtattagagaaa 321  Q
    ||||||| ||  |||  ||||||||||||| ||||||||||| | | |||| |||| ||||||||  ||| |||| ||||||    
T  18929351 attgccgctagctctccaagtcattgggtcttttttgttgacaaggcgaagaaaaaaagagtggacgagtttattggagaaa 18929432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 18929118 - 18929185
Alignment:
Q  16 caattggatgctttgtgcataagtcgcaaatggtttggtcaaggaagtataataatcatcacaacaag 83  Q
    |||||| |||||||||||  ||||| | ||||||||||| ||||||||| ||||||||||||||||||    
T  18929118 caattgaatgctttgtgcggaagtcacgaatggtttggtgaaggaagtagaataatcatcacaacaag 18929185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 34721157 - 34721114
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaa 184  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  34721157 tgaatctcttgaactttttagttggtatgcattcaagcaaccaa 34721114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34730766 - 34730699
Alignment:
Q  16 caattggatgctttgtgcataagtcgcaaatggtttggtcaaggaagtataataatcatcacaacaag 83  Q
    |||||| |||||||||||  ||||| |  |||||||||| ||||||||| ||||||||||||||||||    
T  34730766 caattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaag 34730699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34735365 - 34735298
Alignment:
Q  16 caattggatgctttgtgcataagtcgcaaatggtttggtcaaggaagtataataatcatcacaacaag 83  Q
    |||||| |||||||||||  ||||| |  |||||||||| ||||||||| ||||||||||||||||||    
T  34735365 caattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaag 34735298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 4333817 - 4333856
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaa 180  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4333817 tgaatctcttgagctttttagtttgcatgcattcaagcaa 4333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 6547627 - 6547564
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    ||||||||||||||| || |||| | |||||||||||||||||| ||| || ||||||||||||    
T  6547627 tgaatctcttgagctattcagttggcatgcattcaagcaaccaagtccaatagaagattttgct 6547564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 6814017 - 6814080
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    |||||||||| ||||||| |||| | |||||||||||||||||| ||| || ||||||||||||    
T  6814017 tgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccgatagaagattttgct 6814080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 4322839 - 4322800
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaa 180  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  4322839 tgaatctcttgagctttttagttggcatgcattcaagcaa 4322800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 6500072 - 6500009
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    |||||||||||||||||| || | | |||||||||||||||||| ||| |  ||||||||||||    
T  6500072 tgaatctcttgagcttttcagctggcatgcattcaagcaaccaactccaacagaagattttgct 6500009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 6624153 - 6624110
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaa 184  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  6624153 tgaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6624110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 6649298 - 6649361
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    |||||||||||||||||| |||| | |||||||||| ||||||| |||||   |||||||||||    
T  6649298 tgaatctcttgagcttttcagttggcatgcattcaatcaaccaagtcctacaaaagattttgct 6649361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 6751090 - 6751133
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaa 184  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  6751090 tgaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6751133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 6794687 - 6794750
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    |||||||||| ||||||| |||| | |||||||||||||||||| ||| || ||| ||||||||    
T  6794687 tgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 6794750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 6756709 - 6756751
Alignment:
Q  142 gaatctcttgagctttttagtttgtatgcattcaagcaaccaa 184  Q
    ||||||||||||||||| |||| | ||||||||||||||||||    
T  6756709 gaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 4343207 - 4343244
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagc 178  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  4343207 tgaatctcttgagctttttagttggcatgcattcaagc 4343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 4135518 - 4135482
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaag 177  Q
    ||||||||||||||||||||||| | |||||||||||    
T  4135518 tgaatctcttgagctttttagttggcatgcattcaag 4135482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 6834411 - 6834459
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcct 189  Q
    |||||||||||||||||| |||| | |||||||||||| ||||| ||||    
T  6834411 tgaatctcttgagcttttcagttggcatgcattcaagctaccaagtcct 6834459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 5075460 - 5075404
Alignment:
Q  149 ttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgctg 205  Q
    ||||||||||||||| | |||||||||| ||| ||| |||||| |||||||||||||    
T  5075460 ttgagctttttagttggcatgcattcaaacaagcaagtcctatagaagattttgctg 5075404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 11616 - 11553
Alignment:
Q  141 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaaatcctattgaagattttgct 204  Q
    |||||||||| ||||||| |||| | |||||||||||||||||| ||| || ||| ||||||||    
T  11616 tgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 3313198 - 3313231
Alignment:
Q  50 ttggtcaaggaagtataataatcatcacaacaag 83  Q
    |||||| |||||||||||||||||||||||||||    
T  3313198 ttggtccaggaagtataataatcatcacaacaag 3313231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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