View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_65 (Length: 306)
Name: NF13777_high_65
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 5420726 - 5421002
Alignment:
| Q |
18 |
cattgaaactccaaattgtgtcaaaatcacagtgtcacatatgattttatcaaactcatagtaaattcaaacatagattttgtgtatacctttgtgcaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5420726 |
cattgaaactccaaattgtgtcaaaatcacagtgtcacatatgattttatcaaactcatagtaaattcaaacatagatttagtgtatacctttgtgcaca |
5420825 |
T |
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| Q |
118 |
gtcatagcaagtggcacaatgaccgcaaggaacaaagaaacagttgcgttgttcatcaaaacaaattatgcataacttttcatcatataactcctctgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5420826 |
gtcatagcaagtggcacaatgaccgcaaggaacaaagaaacagttgcgttgttcatcaaaacaaattatgcataacttttcatcatataactcctctgat |
5420925 |
T |
|
| Q |
218 |
acatctgaatttgtttcttccttttcatgaaaaatgtttgttccatatgtcactggattaggctgcatcacaggttc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5420926 |
acatctgaatttgtttcttccttttcatgaaaaatgtttgttccatatgtcactggattaggctgcatcagaggttc |
5421002 |
T |
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