View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13777_high_69 (Length: 280)

Name: NF13777_high_69
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13777_high_69
NF13777_high_69
[»] chr1 (7 HSPs)
chr1 (5-262)||(1524299-1524556)
chr1 (183-247)||(43297868-43297932)
chr1 (182-261)||(31325512-31325591)
chr1 (189-263)||(50451411-50451485)
chr1 (182-259)||(20284358-20284435)
chr1 (182-244)||(5193633-5193695)
chr1 (185-259)||(23464849-23464923)
[»] chr8 (2 HSPs)
chr8 (1-232)||(38347796-38348028)
chr8 (182-259)||(23133146-23133223)
[»] chr3 (5 HSPs)
chr3 (182-263)||(26433255-26433336)
chr3 (186-247)||(38647758-38647819)
chr3 (182-248)||(11896657-11896723)
chr3 (182-247)||(55025378-55025443)
chr3 (193-247)||(53608876-53608930)
[»] chr6 (2 HSPs)
chr6 (182-262)||(12646660-12646740)
chr6 (156-263)||(35232969-35233076)
[»] chr7 (1 HSPs)
chr7 (182-259)||(16770528-16770605)
[»] chr2 (4 HSPs)
chr2 (182-247)||(572698-572763)
chr2 (182-263)||(14654237-14654318)
chr2 (183-247)||(42403793-42403857)
chr2 (159-259)||(19264899-19264999)
[»] chr4 (3 HSPs)
chr4 (183-259)||(46785039-46785115)
chr4 (189-247)||(3881228-3881286)
chr4 (183-244)||(48846453-48846514)
[»] chr5 (3 HSPs)
chr5 (28-94)||(23944370-23944436)
chr5 (182-256)||(23944524-23944598)
chr5 (195-263)||(7813346-7813414)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 262
Target Start/End: Original strand, 1524299 - 1524556
Alignment:
Q  5 cacttggtcctctgatgattccattctccaagcggaagcacaaaaatatttcaagaaccttttggccaacacccaaccccatcaaaaccgcaccttcaat 104  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1524299 cacttggtcctctgatgattccattctccaagcggaagcaaaaaaatatttcaagaaccttttggccaacacccaaccctatcaaaaccgcaccttcaat 1524398  T
Q  105 ttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaaaaccgaagtcttcaatgcccttaactccatgaaacctt 204  Q
    ||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1524399 ttcggcctacaccccaccattgacgagcctagcaagacctccctcacatgtcctatcaccaaaaccgaagtcttcaatgcccttaactccataaaacctt 1524498  T
Q  205 acaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatat 262  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  1524499 acaaagcacccgaccctgatggttttcaatgcatcttcttcaagaaatactggcatat 1524556  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 43297868 - 43297932
Alignment:
Q  183 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  43297868 gcccttaactccatgaaaccctacaaagcacccgaccctgatggcttccattgcatcttcttcaa 43297932  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 31325591 - 31325512
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcata 261  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||| || |||||||||||  |||| |||||||    
T  31325591 tgcccttaactccatgaaaccttacaaagcacctgactcagatggtttccattgtatcttcttcaaacaatattggcata 31325512  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 50451411 - 50451485
Alignment:
Q  189 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 263  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||  | ||||||||||||    
T  50451411 aactccatgaaaccttataaagctcccggcccggatggtttccattgcatcttcttcaaacagtactggcatatt 50451485  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 20284358 - 20284435
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 259  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | ||||||||    
T  20284358 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggca 20284435  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 5193695 - 5193633
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttctt 244  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||  ||||| |||||||||||    
T  5193695 tgcccttaattccatgaaaccatacaaagcacccgaccccgatgacttccattgcatcttctt 5193633  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 23464849 - 23464923
Alignment:
Q  185 ccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 259  Q
    ||||||||| |||||||||||||||||||| |  || ||||| ||||||||||| || |||||  ||||||||||    
T  23464849 ccttaactctatgaaaccttacaaagcaccaggaccagatggcttccaatgcatttttttcaaacaatactggca 23464923  T

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Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 38347796 - 38348028
Alignment:
Q  1 atggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatat-ttcaagaaccttttggccaacacccaaccccatcaaaaccgcacct 99  Q
    ||||||| ||||| ||||||||  |||||||||||||| |||| |||||| |  ||||||||||||||||| ||| | ||||| || |||||||||||||    
T  38347796 atggcacctggtcttctgatgacaccattctccaagcgaaagctcaaaaaaaaattcaagaaccttttggctaactctcaaccacaccaaaaccgcacct 38347895  T
Q  100 tcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaaaaccgaagtcttcaatgcccttaactccatgaa 199  Q
    | || | |||||||||||||||||||||||| || || |||| ||||||||| ||||| ||||  |||||||||||||||| |||||||||||||||| |    
T  38347896 ttaactacggcctacaccccaccattgatgaaccaagcaagatctccctcacttgtcccatcattaaaaccgaagtcttcactgcccttaactccatgca 38347995  T
Q  200 accttacaaagcacccgaccctgatggtttcca 232  Q
    ||| |||||||| || |||| ||||||||||||    
T  38347996 accctacaaagcgccggaccttgatggtttcca 38348028  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 23133223 - 23133146
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 259  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | ||||||||    
T  23133223 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggca 23133146  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 26433336 - 26433255
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 263  Q
    |||||||||||||||||| ||||||||||| || |  |||||||||||||| ||||||||||||||  | ||||||||||||    
T  26433336 tgcccttaactccatgaagccttacaaagcccctggtcctgatggtttccattgcatcttcttcaaacagtactggcatatt 26433255  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 38647819 - 38647758
Alignment:
Q  186 cttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||    
T  38647819 cttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaa 38647758  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 11896657 - 11896723
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaag 248  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| |||||||||||||||    
T  11896657 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaag 11896723  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 55025443 - 55025378
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    |||||||||| ||||||||||||||||||| || | ||| ||||||||||||||||| || |||||    
T  55025443 tgcccttaacaccatgaaaccttacaaagctcctggcccagatggtttccaatgcatatttttcaa 55025378  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 53608930 - 53608876
Alignment:
Q  193 ccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    ||||||| ||||| ||||| ||||   ||||||||||||||||||||||||||||    
T  53608930 ccatgaagccttataaagcccccggtgctgatggtttccaatgcatcttcttcaa 53608876  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 12646740 - 12646660
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatat 262  Q
    |||||| |||||||||||||||||||||||||| | ||| ||||| |||||| |||| ||||||||| |||| ||||||||    
T  12646740 tgccctaaactccatgaaaccttacaaagcacctggcccggatggcttccaaagcattttcttcaagcaatattggcatat 12646660  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 35232969 - 35233076
Alignment:
Q  156 cctatcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatact 255  Q
    |||||||| ||||  ||||||||   |||||| |||||||||||||| |||||||| || |  || ||||||||||| ||||| ||||||||| |||| |    
T  35232969 cctatcactaaaaatgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatatt 35233068  T
Q  256 ggcatatt 263  Q
    ||||||||    
T  35233069 ggcatatt 35233076  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 16770605 - 16770528
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 259  Q
    |||||||||||| |||||||||||||||||||| |  || ||||||||||||||||| || |||||  ||||||||||    
T  16770605 tgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggca 16770528  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 572698 - 572763
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    ||||||||||||||||||||| |||||||||||||  || ||||| ||||| ||||||||||||||    
T  572698 tgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaa 572763  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 14654318 - 14654237
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 263  Q
    |||||||||||||||||| || |||||||| || |  || ||||||||||| ||||||||||||||| | |||| |||||||    
T  14654318 tgcccttaactccatgaagccctacaaagcccctggtccagatggtttccattgcatcttcttcaagcagtactagcatatt 14654237  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 42403857 - 42403793
Alignment:
Q  183 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    ||||| ||||| ||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||    
T  42403857 gccctcaactctatgaagccttacaaggcacctggtcctgatggtttccattgcatcttcttcaa 42403793  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 19264899 - 19264999
Alignment:
Q  159 atcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggc 258  Q
    ||||| ||||||||||| |||  |||||| ||||| ||||| || |||||||| || |  |||||||| || || ||||| ||||||||  |||||||||    
T  19264899 atcactaaaaccgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggc 19264998  T
Q  259 a 259  Q
    |    
T  19264999 a 19264999  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 46785115 - 46785039
Alignment:
Q  183 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggca 259  Q
    ||||| |||||||||||||| |||||| | || |  || ||||||||||||||||||||||||||  ||||||||||    
T  46785115 gccctcaactccatgaaaccctacaaatctcctggtccggatggtttccaatgcatcttcttcaaacaatactggca 46785039  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 3881228 - 3881286
Alignment:
Q  189 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaa 247  Q
    ||||||||||||||||| ||||| || | ||| ||||||||||| ||||||||||||||    
T  3881228 aactccatgaaaccttataaagctcctggcccggatggtttccattgcatcttcttcaa 3881286  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 48846453 - 48846514
Alignment:
Q  183 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttctt 244  Q
    |||||| |||||||||||||||||||||| || |  |||||||| || ||||| ||||||||    
T  48846453 gcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttctt 48846514  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 23944370 - 23944436
Alignment:
Q  28 ttctccaagcggaagcacaaaaatatttcaagaaccttttggccaacacccaaccccatcaaaaccg 94  Q
    |||||||||  ||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||    
T  23944370 ttctccaagaagaagctcaaaagtatttcaagaacctctttgccaacacccaacctcatcataaccg 23944436  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 23944524 - 23944598
Alignment:
Q  182 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactg 256  Q
    |||||||||| |||||||||| | |||||| || | ||| |||||||| ||||| |||||||||||| |||||||    
T  23944524 tgcccttaacaccatgaaacccttcaaagcccctggcccagatggttttcaatgtatcttcttcaagcaatactg 23944598  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 7813346 - 7813414
Alignment:
Q  195 atgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatatt 263  Q
    ||||||||||||||||| || |  ||||| |||||||| || |||||||||||  | ||||||||||||    
T  7813346 atgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatatt 7813414  T

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