View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_70 (Length: 279)
Name: NF13777_high_70
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 33213959 - 33214125
Alignment:
| Q |
11 |
ttattcttagaaaaacccttattcttaattaaactatgttatgcataactcatgagcaagtattgtgatcaacgatgtattagtaggatttcgaatagtt |
110 |
Q |
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| T |
33213959 |
ttattcttagaaaaacccttattcttaattaaactatgttatgcataactcatgagcaagtcttgtgatcaacgatgtattagtaggatttcgaatagtt |
33214058 |
T |
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| Q |
111 |
tcgtacttgacctcgatagtgggtacttttttatatatggtgtaatcactaactatatatttagcta |
177 |
Q |
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| T |
33214059 |
tcgtacttgacctcgatagtggatacttttttatatatggtgtaatcactaactatatatttagcta |
33214125 |
T |
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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 33214167 - 33214204
Alignment:
| Q |
170 |
tttagctatcaatgaatgaaatatctatttatttgacc |
207 |
Q |
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| T |
33214167 |
tttagctatcaatgaatgaaatacctatttatttgacc |
33214204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 42319351 - 42319261
Alignment:
| Q |
113 |
gtacttgacctcgatagtgggtacttttttatatatggtgtaatcactaactatatatttagctatcaatgaatgaaatatctatttatttgacc |
207 |
Q |
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| T |
42319351 |
gtacttgaccccaatagtgagcacttttctatacacagtgtaatcactagctat----ttagctatcaatgaatgaaatatctacttgtttgacc |
42319261 |
T |
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