View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_high_81 (Length: 262)
Name: NF13777_high_81
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 20953889 - 20953671
Alignment:
| Q |
19 |
tgaaacaaataaaatagcaaaggattgtgctaacagaacgaatccagcatatactttctagattcagaatatctttaggatctatcacttcaaattggat |
118 |
Q |
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| T |
20953889 |
tgaaacaaataaaatggcaaaggattgtgctaacagaacgaatctagcatatactttctagattcagaatatctttaggatctatcacttcaaattggat |
20953790 |
T |
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| Q |
119 |
cactgtccccttcacttttatgtaggag-----------tcattcacaataatgacataaaaattgacaatattattctttgacatttactttataatta |
207 |
Q |
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| T |
20953789 |
cactgtccccttcacttttatgtaggagtctaggagatatcattcacaataatgacataaaaattgacaatattattctttgacatttactttataatga |
20953690 |
T |
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| Q |
208 |
gttgaaacttgtggcccag |
226 |
Q |
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| T |
20953689 |
gttgaaacttgtggcccag |
20953671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 21010275 - 21010100
Alignment:
| Q |
35 |
gcaaaggattgtgctaacagaacgaatccagcatatactttctagattcagaatatctttaggatctatcacttcaaattggatcactgtccccttcact |
134 |
Q |
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| T |
21010275 |
gcaaaggattgtgccaacagaacgaatctagcatatactttttagattcagaatatccttaggatctatcaattcacattgta------------tcact |
21010188 |
T |
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| Q |
135 |
tttatgtaggag---tcattcacaataatgacataaaaattgacaatattattctttgacatttacttt---ataattagttgaaacttg |
218 |
Q |
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| T |
21010187 |
tttatgtaagagatatcattcac-ataatgacataaaaattgacaata-tattctttgacatttactttataataattagttgaaacttg |
21010100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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