View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_84 (Length: 254)
Name: NF13777_high_84
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_84 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38183066 - 38182831
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38183066 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38182967 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38182966 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38182867 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182866 |
aaagctttccacgttcatgttttccgatgtttgctt |
38182831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38188065 - 38188300
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38188065 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38188164 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38188165 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38188264 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188265 |
aaagctttccacgttcatgttttccgatgtttgctt |
38188300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38210292 - 38210057
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38210292 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38210193 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38210192 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38210093 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210092 |
aaagctttccacgttcatgttttccgatgtttgctt |
38210057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38183214 - 38183449
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38183214 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38183313 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38183314 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggc |
38183413 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183414 |
aaagctttccacgttcatgttttccgatgtttgctt |
38183449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38215143 - 38214908
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38215143 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38215044 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38215043 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcatcgtcgatcgtaatatcaacttctttgacctcatggc |
38214944 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214943 |
aaagctttccacgttcatgttttccgatgtttgctt |
38214908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38169534 - 38169769
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38169534 |
ttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38169633 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38169634 |
ggcttactgctcttcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38169733 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169734 |
aaagctttccacgttcatgttttccgatgtttgctt |
38169769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38215291 - 38215522
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
38215291 |
ttcttgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaa-tccaaccta |
38215389 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38215390 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38215489 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38215490 |
aaagctttccacgttcatgttttccgatgtttg |
38215522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38185323 - 38185558
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
38185323 |
ttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaaccta |
38185422 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38185423 |
ggcttacttctcttcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38185522 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185523 |
aaagctttccacgttcatgttttccgatgtttgctt |
38185558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38213034 - 38212799
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
38213034 |
ttctcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaaccta |
38212935 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38212934 |
ggcttacttctcttcatgatcatcgtcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38212835 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38212834 |
aaagctttccacgttcatgttttccgatgtttgctt |
38212799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 38443119 - 38443354
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
38443119 |
ttctcgaaccctcttttcattctcaataccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacttatggtggagaaatccaaccta |
38443218 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38443219 |
ggcttactgctcttcatgatcatcgtcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggc |
38443318 |
T |
|
| Q |
201 |
aaagctttccacgttcatgttttccgatgtttgctt |
236 |
Q |
| |
|
|||||||||| | |||||| ||||| |||||||||| |
|
|
| T |
38443319 |
aaagctttcctcattcatggtttccaatgtttgctt |
38443354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 38453349 - 38453141
Alignment:
| Q |
26 |
gtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacctaggcttactgctcttcatgatcatcg |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38453349 |
gtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccaaggcttacttctcttcatgatcatcg |
38453252 |
T |
|
| Q |
126 |
tcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggcaaagctttccacgttcatgttttcc |
225 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38453251 |
tcgttattcctacatcggcggagacaataaaatcatcaccgtcgatcgtaatatcaacttctccgacctcatggcaaagctttccatattcatgttttcc |
38453152 |
T |
|
| Q |
226 |
gatgtttgctt |
236 |
Q |
| |
|
||||||||||| |
|
|
| T |
38453151 |
gatgtttgctt |
38453141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38197570 - 38197370
Alignment:
| Q |
1 |
ttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaaccta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38197570 |
ttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaaccta |
38197471 |
T |
|
| Q |
101 |
ggcttactgctcttcatgatcatcgtcggtattcctacatcgacggagacaataaaatcatcaccgtcgattgtaatatcaacttctccgacctcatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
38197470 |
ggcttactgctcttcatgatcatcttcgttattcctacatcggtggagacaataaaatcatcaccgtcgatcgtaatatcaacttctctgacctcatggc |
38197371 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
38197370 |
a |
38197370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 38452167 - 38452129
Alignment:
| Q |
88 |
aaaatccaacctaggcttactgctcttcatgatcatcgt |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
38452167 |
aaaatccaacctagacttactgctcttcatgttcatcgt |
38452129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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