View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_85 (Length: 252)
Name: NF13777_high_85
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 46303078 - 46303300
Alignment:
| Q |
13 |
aatatgcatgtattagtaattttcctttttacttgttcttttatatctgtcaatcattttttccctgatggtgcagtttgcaactatacacaatatgtgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303078 |
aatatgcatgtattagtaattttcctttttacttgttcttttatatctgtcaatcattttttccctgatggtgcagtttgcaactatacacaatatgtgc |
46303177 |
T |
|
| Q |
113 |
tataataatgatattaaaagatcctatgtttgagattaatactacctgattaaggtgatgaatgtttggtaaatgcattaggacaagcattaatggcaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46303178 |
tataataatgatattaaaagatcctatgtttgagattaatactacctgattaaggtgatgaatgtttggtaaatgcattaggacaagcattaatggcaat |
46303277 |
T |
|
| Q |
213 |
gaagtcttccttcaacaacatag |
235 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46303278 |
gaagtcttccttcaacaacatag |
46303300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University