View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_high_88 (Length: 243)
Name: NF13777_high_88
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_high_88 |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 11268922 - 11269147
Alignment:
| Q |
18 |
ataacaatgttaactttgattcaatctaaaacaagttcactggattccaagatgattacaagtttgatggaagacctttttataacctaaaaccataaga |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11268922 |
ataacaatgttaactttgattcaatctaaaataagttcactggattccaagatgattacaagtttgatggaagacctttttataacctaaaaccttaaga |
11269021 |
T |
|
| Q |
118 |
caatgcattaaactcatattacaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaatgcacggcctgcatagcagat |
217 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11269022 |
caatgccttaaactcatattacaagcataaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaacgcacggcctgcatagcagac |
11269121 |
T |
|
| Q |
218 |
catgcacttttcagcttccaagtgtt |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11269122 |
catgcacttttcagcttccaagtgtt |
11269147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 11281279 - 11281054
Alignment:
| Q |
18 |
ataacaatgttaactttgattcaatctaaaacaagttcactggattccaagatgattacaagtttgatggaagacctttttataacctaaaaccataaga |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
11281279 |
ataacaatgttaactttgattcaatctaaaacaagttcaccggattcgaagatgattacaagtttgatggaagacctttttataacctaaaaccttaaca |
11281180 |
T |
|
| Q |
118 |
caatgcattaaactcatattacaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaatgcacggcctgcatagcagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
11281179 |
caatgcattaaactcatattacaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaacgcacggcttgcataacagac |
11281080 |
T |
|
| Q |
218 |
catgcacttttcagcttccaagtgtt |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11281079 |
catgcacttttcagcttccaagtgtt |
11281054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 11242459 - 11242282
Alignment:
| Q |
20 |
aacaatgttaactttgattcaatctaaaacaagttcactggattccaagatgattacaagtttgatggaagacctttttataacctaaaaccataagaca |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||| |||||| ||||||||| |||||| |
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| T |
11242459 |
aacaatgttaagtttgattcaatctaaaacaagttcacaagattccaaaatgattacaggtatgatggaagacctatttatagcctaaaacctcaagaca |
11242360 |
T |
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| Q |
120 |
atgcattaaactcata-ttacaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaa |
196 |
Q |
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||||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||| |
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|
| T |
11242359 |
atgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaa |
11242282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 27318544 - 27318360
Alignment:
| Q |
61 |
attccaagatgattacaagtttgatggaagacctttttataacctaaaaccataagacaatgcattaaactcatatt-acaagcttaaaaatagg-aaaa |
158 |
Q |
| |
|
|||||||||||||||||| | ||| ||| ||||| |||||||| || | | ||||||| ||||||||||| ||| |||||||| |||||||| |||| |
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| T |
27318544 |
attccaagatgattacaaatctgacggaggacctatttataacatagattctcaagacaaggcattaaactcgaatttacaagctttaaaatagggaaaa |
27318445 |
T |
|
| Q |
159 |
ccaaagagttttgtaacagctctagctaacagcaaaaatgcacggcctgcatagcagatcatgcacttttcagcttccaagtgtt |
243 |
Q |
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|||||||||||||||||||||| |||| |||||||||| |||||| ||||| |||| | |||||||||||||||||||| ||||| |
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| T |
27318444 |
ccaaagagttttgtaacagctccagctgacagcaaaaacgcacggtctgcacagcaaaccatgcacttttcagcttccacgtgtt |
27318360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 12727321 - 12727397
Alignment:
| Q |
20 |
aacaatgttaactttgattcaatctaaaacaagttcactggattccaagatgattacaagtttgatggaagaccttt |
96 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| | ||||||| ||||||| |
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| T |
12727321 |
aacaatgttaactttgattcaatcaaaaacaagttgacaagattccaagatgattacaaatctgatggaggaccttt |
12727397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 17735193 - 17735244
Alignment:
| Q |
20 |
aacaatgttaactttgattcaatctaaaacaagttcactggattccaagatg |
71 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17735193 |
aacaatattaactttgattcaatctaaaacaagttcaccagattccaagatg |
17735244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 61 - 175
Target Start/End: Original strand, 42687841 - 42687956
Alignment:
| Q |
61 |
attccaagatgattacaagtttgatggaagacctttttataacctaaaaccataagacaatgcattaaactcata-ttacaagcttaaaaataggaaaac |
159 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||||||| ||| |||||| ||||| ||||||| |
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| T |
42687841 |
attccaagatgattacaagtttgatggaggacctgtttatagcctaaaacctcaagacaagacattaaactcatatttataagctttaaaatgggaaaac |
42687940 |
T |
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| Q |
160 |
caaagagttttgtaac |
175 |
Q |
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|||||||||| ||||| |
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| T |
42687941 |
caaagagtttcgtaac |
42687956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 20684951 - 20684885
Alignment:
| Q |
66 |
aagatgattacaagtttgatggaagacctttttataacctaaaaccataagacaatgcattaaactc |
132 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| ||| ||||| ||||||| |||||||||| |
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|
| T |
20684951 |
aagatgattacaagtatgatggaggacctatttatagcctgaaacctcaagacaagacattaaactc |
20684885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 243
Target Start/End: Original strand, 9798640 - 9798811
Alignment:
| Q |
66 |
aagatgattacaagtttgatggaagacctttttataacctaaaaccataagacaatgcattaaactcatatt-acaagcttaaaaatagga-aaaccaaa |
163 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||| |||| |||| |||||| ||||||||||| ||| |||||||| ||||||||| |||||||| |
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|
| T |
9798640 |
aagatgattacaagttggatg----acctatttatagcctagaacctctagacaaggcattaaactcgaatttacaagctttaaaataggagaaaccaaa |
9798735 |
T |
|
| Q |
164 |
gagttttgtaacagctctagctaacagcaaaaatgcacggcctgcatagcagatcatgcacttttcagcttccaagtgtt |
243 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| ||||| | | | ||||||||||| |||||||||||| |
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|
| T |
9798736 |
gagttttgtaacagctctagctgacagcaaaaacgcacggtctgcaca----accgtgcacttttcaacttccaagtgtt |
9798811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 15201794 - 15201687
Alignment:
| Q |
136 |
ttacaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaatgcacggcctgcatagcagatcatgcacttttcagcttc |
235 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||| |||| || ||| | ||||||||||||||| |
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|
| T |
15201794 |
ttacaaactttaaaataggaaaaccaaagagttttgtaacagctctagttgacaacaaaaacgcacggtatgcacagtagaccgtgcacttttcagctta |
15201695 |
T |
|
| Q |
236 |
caagtgtt |
243 |
Q |
| |
|
|||||||| |
|
|
| T |
15201694 |
caagtgtt |
15201687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 201
Target Start/End: Original strand, 16999332 - 16999473
Alignment:
| Q |
61 |
attccaagatgattacaagtttgatggaagacctttttataacctaaaaccataagacaatgcattaaactcatatt-acaagcttaaaaataggaaaac |
159 |
Q |
| |
|
||||||||||||||| |||| |||| || ||||| |||||| ||||||||| |||||| |||||||||| ||| |||||||| ||||||||||||| |
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|
| T |
16999332 |
attccaagatgattataagtctgattgaggacctatttatagcctaaaacctcaagacatgacattaaactcggatttacaagctttaaaataggaaaac |
16999431 |
T |
|
| Q |
160 |
caaagagttttgtaacagctctagctaacagcaaaaatgcac |
201 |
Q |
| |
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| ||||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
16999432 |
cgaagagttttgtaacatctcctgctgacagcaaaaatgcac |
16999473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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