View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_1 (Length: 1183)
Name: NF13777_low_1
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 402 - 835
Target Start/End: Original strand, 41704969 - 41705399
Alignment:
| Q |
402 |
ctgcattgcattttccaactgaattttgtatggatattgtgtacacgtgtgaggatgcgcccacaaggttacaaattcaccagctggaaacttcaaaacc |
501 |
Q |
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| T |
41704969 |
ctgcattgcattttccaactgaattttgtatggatattgtgtacacgtgtgaggatgcgcccacaaggttacaaattcaccagctggaaacttcaaaacc |
41705068 |
T |
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| Q |
502 |
tgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcattctctcactcacatcatcacacaccactccatctacaaattcaaaaa |
601 |
Q |
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| T |
41705069 |
tgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcat--tctcactcatatcatcacacaccactccatctacaaattcaaaaa |
41705166 |
T |
|
| Q |
602 |
ctcttctcctctctctgtattcaagttccaacacnnnnnnnncaaata--ctgtttaaccaaatggcttctcccctgttatttctcctcatcatcacact |
699 |
Q |
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| T |
41705167 |
ctcttctc--ctctctgtattcaagttccaacac-aaaaaaacaaataccctgtttaaccaaatggcttctcccctgttatttctcctcctcatcacact |
41705263 |
T |
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| Q |
700 |
cttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatagaattcaacacaacccaccacctccttaaatccacc |
799 |
Q |
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| T |
41705264 |
cttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatagaattcaacacaacccaccacctccttaaatccacc |
41705363 |
T |
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| Q |
800 |
tcaactcactcattatcacgcttccaccgccataaa |
835 |
Q |
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| T |
41705364 |
tcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 895 - 1178
Target Start/End: Original strand, 41705459 - 41705742
Alignment:
| Q |
895 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
994 |
Q |
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| T |
41705459 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
41705558 |
T |
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| Q |
995 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
1094 |
Q |
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| T |
41705559 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
41705658 |
T |
|
| Q |
1095 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatctcact |
1178 |
Q |
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| T |
41705659 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcact |
41705742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 41704579 - 41704840
Alignment:
| Q |
19 |
cagtgtacaatgttttgtactttgtttcttcagaaacaattaacctttggggtccctttaacaagtgaattacttatcaagtggtccatgatgcatcact |
118 |
Q |
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| T |
41704579 |
cagtgtaaaatgttttgtactttgtttcttcagaaacaattaacctttggggtccctttaacaagtgaattacttatcaagtggtccatgatgcatcact |
41704678 |
T |
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| Q |
119 |
gcttaaaaaatatcagatattctatcgaaaattgacgatgttctctagaagttcacaatcttcatttatgattgagatggtgattacatgggtgtgcgtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
41704679 |
gcttaaaaaatatcagatattctatcgaaaattgacgatgttctttagaagttcacaatcttcatttatgattgagatggtgattacatgggtgtccatt |
41704778 |
T |
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| Q |
219 |
tgacgaaaccattgaaaaacaaatatgacataagttgagacatacatattgattaggtcaaa |
280 |
Q |
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| T |
41704779 |
tgatgaaaccattgaaaaacaaatatgacataagttgagacatacatattgattaggtcaaa |
41704840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 41704885 - 41704937
Alignment:
| Q |
311 |
caaaaatctcaaacaaattatttatgcaatcttttaatctaaacttatggtatt |
364 |
Q |
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| T |
41704885 |
caaaagtcccaaacaaatt-tttatgtaatcttttaatctaaacttatggtatt |
41704937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 917 - 997
Target Start/End: Complemental strand, 3744418 - 3744338
Alignment:
| Q |
917 |
caacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgtgaa |
997 |
Q |
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|||| |||||| ||||||||||||||||| || ||||||||||||||||| || |||| ||| | ||||| ||||||||| |
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| T |
3744418 |
caactcataacactctacatggacacaggtagcgaccttgtttggttcccttgttcacctttcgaatgcattctctgtgaa |
3744338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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