View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_10 (Length: 564)
Name: NF13777_low_10
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 20370981 - 20370449
Alignment:
| Q |
18 |
caacaaagacattatgcatagctctgtctagtttacaaacaacccacatatgaatagaacgcgagaacccaaaaacttgaactctagcatttctatcatg |
117 |
Q |
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| T |
20370981 |
caacaaagacattatgcatagctctgtctagtttaccaacaacccacatatgaatagaacgcgagaacccaaaaacttgaactctagcatttctatcatg |
20370882 |
T |
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| Q |
118 |
ggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcccacatactgcaactgttttggaatattagtgaaatagaggcagcc |
217 |
Q |
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| T |
20370881 |
ggaaacataaacatcagatagaatgccacatgtctcaaagccttttatcaactcc-acatacaacaactgttttggaatattagtgaaatagaggcagcc |
20370783 |
T |
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| Q |
218 |
gtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtctccttacgcgtggaaaaccacattaaaaagcacaac |
317 |
Q |
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| T |
20370782 |
gtcgttggtaaaagattaccgcgagtaacataattatgtcgccagtggggtaatgttaattgtttccttacgcgtgaaaaaccacattaaaaagcacaac |
20370683 |
T |
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| Q |
318 |
catgatcaaaatgcaggggcgctgaaccttgtttctgcttcagacgtcatcgcgatggctctcagatcgactccatgattgcgataatgaaacccctgtg |
417 |
Q |
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| T |
20370682 |
catgatcaaaatgcaggggcgctgaaccttgtttccgcttcaaacgtcatcgcgatggctctcagaccgaccccatgattgcgataatgaaacccctgtg |
20370583 |
T |
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| Q |
418 |
aatgaaagcaatcaaaacctatacctccttgccaataattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaata |
517 |
Q |
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| T |
20370582 |
aatgaaagcaatcaaaacctatacctccttgccaataattaatttcatttttgtaatcctcaagattccatctttcacaaatatatatcaattcaaaata |
20370483 |
T |
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| Q |
518 |
acnnnnnnntcggatacaagtattcagaataatc |
551 |
Q |
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| T |
20370482 |
acaaaaaaatcggatacaagtattcaggataatc |
20370449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 20390443 - 20390346
Alignment:
| Q |
453 |
taattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataat |
550 |
Q |
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| T |
20390443 |
taattaatttcattttcgtaatcctttagattccatctttcactaatatatatcaattcaaaataacaagaaaatcggatacaactattcacaataat |
20390346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 454 - 505
Target Start/End: Complemental strand, 20377962 - 20377911
Alignment:
| Q |
454 |
aattaatttcattttcgtaatcctcaagattccatctttcacaaatatatat |
505 |
Q |
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| T |
20377962 |
aattaatttcattttggtaatcatcaagattccatctttcactaatatatat |
20377911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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