View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_102 (Length: 235)
Name: NF13777_low_102
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_102 |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32414140 - 32414363
Alignment:
| Q |
1 |
ttgatcattaacaactgtgaagttctggatgcacggctcctttgcatatcaattactacacttgtcaagttaactatacttatgcataattatgatcctg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32414140 |
ttgatcattaacaaatgtgaagttctggatgcacggctcctttgcatatcaattactacacttgtcaagttaactatacttatgcattattatgatcctg |
32414239 |
T |
|
| Q |
101 |
agaaatcttttggaatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32414240 |
agaaatcttttggaatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctc |
32414339 |
T |
|
| Q |
201 |
ttctatcaaacatgtgaaaattga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
32414340 |
ttctatcaaacatgtgaaaattga |
32414363 |
T |
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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 13485450 - 13485325
Alignment:
| Q |
90 |
ttatgatcctgagaaatcttttggaatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaag |
189 |
Q |
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||||| |||||||| | |||||||||||||||||| |||||||||| || | |||||||||| ||||||||| ||||||||||| | |||| |||| |
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| T |
13485450 |
ttatgctcctgagacctattttggaatcgagctatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactccatgggatcaag |
13485351 |
T |
|
| Q |
190 |
agcaatctctcttctatcaaacatgt |
215 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
13485350 |
agcaatctctcttctatcaaacatgt |
13485325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 4150201 - 4150313
Alignment:
| Q |
114 |
aatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacat |
213 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||||| ||||| |||| ||||||||||| |||| ||| | |||||||||||||||||||||| |
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| T |
4150201 |
aatcgagttatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacat |
4150300 |
T |
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| Q |
214 |
gtgaaaattgatg |
226 |
Q |
| |
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|| |||||||||| |
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| T |
4150301 |
gtaaaaattgatg |
4150313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 4165970 - 4166082
Alignment:
| Q |
114 |
aatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacat |
213 |
Q |
| |
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||||||| |||| |||||||||| ||||||||||||||| ||||| |||| ||||||||||| |||| ||| | |||||||||||||||||||||| |
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| T |
4165970 |
aatcgagttatctactccaagtctccgtagctttgattttaagggtaatcctattcagaaactcagtgggaacaataacaatctctcttctatcaaacat |
4166069 |
T |
|
| Q |
214 |
gtgaaaattgatg |
226 |
Q |
| |
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|| |||||||||| |
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| T |
4166070 |
gtaaaaattgatg |
4166082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 13490462 - 13490286
Alignment:
| Q |
39 |
cctttgcatatcaattactacacttgtcaagttaactatacttatgcataattatgatcctgagaaatcttttggaatcgagctatcagctccaagtctt |
138 |
Q |
| |
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|||||||||||||| ||| | ||||||| | ||||||||| ||| | ||||| |||||||| | ||| ||||| || |||| ||||||||||| |
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| T |
13490462 |
cctttgcatatcaagtaccaaacttgtccaattaactatatacatgatttcttatgctcctgagacctatttcggaattgatatatctactccaagtctt |
13490363 |
T |
|
| Q |
139 |
tgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgt |
215 |
Q |
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|||| |||||| ||| ||||||||| ||||||||||| | |||||||||| |||||||||||||| |||||||| |
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| T |
13490362 |
tgtacctttgagtttcatggtattcctattcagaaactccatcggagcaagagaaatctctcttctattaaacatgt |
13490286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 14288374 - 14288276
Alignment:
| Q |
118 |
gagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatgtg |
216 |
Q |
| |
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|||||||| |||||||||| |||| |||| |||||||||||| |||| |||| |||||| ||||| || | ||||||||||||||||||||||||| |
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| T |
14288374 |
gagctatccactccaagtctctgtaacttttattttaggggtactcctcttcaaaaactccgtgggagtaaaatcaatctctcttctatcaaacatgtg |
14288276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 28927920 - 28927836
Alignment:
| Q |
130 |
ccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacatg |
214 |
Q |
| |
|
|||| |||||||| |||||| ||| | | || ||| ||| |||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
28927920 |
ccaaatctttgtacctttgaatttggagttacacctcttccgaaactctgtgggagtaagagcaatctctcttctatcaagcatg |
28927836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 28091696 - 28091797
Alignment:
| Q |
114 |
aatcgagctatcagctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttctatcaaacat |
213 |
Q |
| |
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||||||| |||| |||||| |||||||| |||| ||||| ||| |||| |||| |||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
28091696 |
aatcgagttatctactccaaatctttgtacctttacttttattggttctccttttcacaaactctatgggagcaagaccaatctcgcttctatcaaacat |
28091795 |
T |
|
| Q |
214 |
gt |
215 |
Q |
| |
|
|| |
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|
| T |
28091796 |
gt |
28091797 |
T |
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Target: scaffold0210 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 15815 - 15739
Alignment:
| Q |
128 |
ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactctacgggagcaagagcaatctctcttct |
204 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| |||| ||||| | || ||||| |||||||||||||| |
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| T |
15815 |
ctccaagtctttatagctttgattttacgggtattcctcttcaaaaactatgtggaagcaaatgcaatctctcttct |
15739 |
T |
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