View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_104 (Length: 232)
Name: NF13777_low_104
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_104 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 6265691 - 6265489
Alignment:
| Q |
18 |
acaaacagctttcagcattgaatttgaatatgatagcaactttggaattcctggagcattcaaaattaagaactttatgtcaactgagttcctccttgtg |
117 |
Q |
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| T |
6265691 |
acaaacagctttcagcattgaatttgaatatgatagcaactttggaattcctggagcattcaaaattaagaactttatgtcaactgagttcctccttgtg |
6265592 |
T |
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| Q |
118 |
agtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaactacctaactgatcgtatattct |
217 |
Q |
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| T |
6265591 |
agtttgactcttgatgatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaactacctaactgatcgtattttct |
6265492 |
T |
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| Q |
218 |
tcg |
220 |
Q |
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||| |
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| T |
6265491 |
tcg |
6265489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 6425677 - 6425551
Alignment:
| Q |
61 |
ggaattcctggagcattcaaaattaagaactttatgtcaac-tgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcac |
159 |
Q |
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| T |
6425677 |
ggaattccaggagcattctatattgagaattttttg-caacatgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaac |
6425579 |
T |
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| Q |
160 |
tttgtttgcaactcgtgggtttacaatg |
187 |
Q |
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| T |
6425578 |
tttgtttgcaactcttgggtttacaatg |
6425551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 6364838 - 6364754
Alignment:
| Q |
110 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaa |
194 |
Q |
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| T |
6364838 |
tccttgtcagcttgactcttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatgggtttacaacgctaaaaa |
6364754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 6333525 - 6333441
Alignment:
| Q |
110 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaa |
194 |
Q |
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| T |
6333525 |
tccttgtaagtttgacgcttgaagatattcccatccatggaaccatcaactttgtttgcaactcatggatttacaatgctaaaaa |
6333441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 6354083 - 6354007
Alignment:
| Q |
110 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaat |
186 |
Q |
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| T |
6354083 |
tccttgtgagtttgacacttgaagatgttccaaaccatggatccatccactttgtctgcaactcatggatttacaat |
6354007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 7461093 - 7461017
Alignment:
| Q |
110 |
tccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaat |
186 |
Q |
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| T |
7461093 |
tccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatggattcacaat |
7461017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 6290846 - 6290760
Alignment:
| Q |
112 |
cttgtgagtttgactcttgaggatatcccaaacgttggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaactac |
198 |
Q |
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| T |
6290846 |
cttgtaagtttgacccttgaagatgttcccaaccatggaaccatcaactttgtttgcaactcatggatttacaatgctcaaaactac |
6290760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 42694864 - 42694737
Alignment:
| Q |
61 |
ggaattcctggagcattcaaaattaagaactttatgtcaactgagttcctccttgtgagtttgactcttgaggatatcccaaacgttggaaccattcact |
160 |
Q |
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||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||||||||||| || || ||||| ||||| ||| ||| |
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| T |
42694864 |
ggaattcctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctact |
42694765 |
T |
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| Q |
161 |
ttgtttgcaactcgtgggtttacaatgc |
188 |
Q |
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|||| |||||||| ||| |||| ||||| |
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| T |
42694764 |
ttgtatgcaactcctggatttataatgc |
42694737 |
T |
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