View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_107 (Length: 227)
Name: NF13777_low_107
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 40043137 - 40043221
Alignment:
| Q |
1 |
ttgcttgtgcctcaagaaattgaaagagaacagagcaaacaggggtaacaagacacatgaaagaatatagataatatctttagac |
85 |
Q |
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| T |
40043137 |
ttgcttgtgcctcaagaaattgaaagagaacagagcaaacaggggaaacaaaacacatgaaagaatatagataatatctttagac |
40043221 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 40043288 - 40043347
Alignment:
| Q |
152 |
aggttctagtatgttggttcacatatttataggattcctttgatctgtggaagaaaatga |
211 |
Q |
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| T |
40043288 |
aggttctagcatgttggttcacatatttataggattcctttgatctgtggaagaaaatga |
40043347 |
T |
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