View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13777_low_109 (Length: 227)
Name: NF13777_low_109
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_109 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2563601 - 2563380
Alignment:
| Q |
1 |
ctagaggtcatgaaatatgctgcttcacataatgtcgaggaactcacaacctatgctggcccatggcgcataaaggattttgaattgcctcattccatct |
100 |
Q |
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| T |
2563601 |
ctagaggtcatgaagtatgctgcttcacataatgtcgaggaactcacaacctatgctggcccatggctcataaagaattttgaattgcctcattccatct |
2563502 |
T |
|
| Q |
101 |
ttcattgtcattctttgacatctcttaagcttgactttgggcatccatattcatctggccgtagtaagataatgtttccaaagtcattgaacttgccggc |
200 |
Q |
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| T |
2563501 |
ttcattgtcattctttgacatctcttaagcttgactttgggcatccatattcatctggccgtagtaagataatgtttccaaagtcattgaacttgccggc |
2563402 |
T |
|
| Q |
201 |
attgaaaaccttgcatctttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2563401 |
attgaaaaccttgcatctttct |
2563380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 34800264 - 34800118
Alignment:
| Q |
70 |
ataaaggattttgaattgcctcattccatctttcattgtcattctttgacatctcttaagcttgactttgggcatccatattcatctggccgtagtaaga |
169 |
Q |
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| T |
34800264 |
ataaaagatcttgaatttcccccttccatttttaattctcattctttgacatttcttaagcttgacttttattatccatctgcatatggctgtggtaag- |
34800166 |
T |
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| Q |
170 |
taatgtttccaaagtcattgaacttgccggcattgaaaaccttgcatctt |
219 |
Q |
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| T |
34800165 |
--atgtttccaaaatctttgaacttgccggcattgaaaaccttgtatctt |
34800118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 225
Target Start/End: Complemental strand, 34776306 - 34776177
Alignment:
| Q |
93 |
ttccatctttcattgtcattctttgacatctcttaagcttgactttgggcatccatattcatctggccgtagtaagataatgtttccaaagtcattgaac |
192 |
Q |
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| T |
34776306 |
ttccatttttaattctcaatctatgacatttcttaagcttgactttcggtatacatgtccatatggccttggtaagat---gtttccaaaatctttgaac |
34776210 |
T |
|
| Q |
193 |
ttgccggcattgaaaaccttgcatctttctgat |
225 |
Q |
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| T |
34776209 |
ttgccggcattgaaaaccttgcatcttactgat |
34776177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 23273205 - 23273153
Alignment:
| Q |
164 |
gtaagataatgtttccaaagtcattgaacttgccggcattgaaaaccttgcat |
216 |
Q |
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| T |
23273205 |
gtaagacaatgtttccaaaatccttgaacttgccatcattgaaaactttgcat |
23273153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 24986108 - 24986156
Alignment:
| Q |
171 |
aatgtttccaaagtcattgaacttgccggcattgaaaaccttgcatctt |
219 |
Q |
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|||||||||||| || ||||| |||||| ||||||||| |||||||||| |
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|
| T |
24986108 |
aatgtttccaaaatctttgaatttgccgtcattgaaaatcttgcatctt |
24986156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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