View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13777_low_11 (Length: 552)
Name: NF13777_low_11
Description: NF13777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13777_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 38 - 541
Target Start/End: Complemental strand, 16017688 - 16017184
Alignment:
| Q |
38 |
ataaaaatctaaaataacatagaaacttctcatggattcaaataagaacatgcataagtacttagatgtctccccacattgagaacgagaaattctatga |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16017688 |
ataaaaatctaaaataacatagaaacttctcatggattcaaataagaacatgcataagtacttagatgtctccccacattgagaacgagaaattctatga |
16017589 |
T |
|
| Q |
138 |
aatagaa-aaaatttagttaccaactcaaaaaaggttcacagatatattttgacatgcagaaaatataaaggtggaaattttttagattaacaactagct |
236 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16017588 |
aatagaacaaaatttagttactaactcaaaaaaggttcacagatatattttgacatgcagaaaatataaaggtggaaattttttagattaacaactagct |
16017489 |
T |
|
| Q |
237 |
ctcgtacctgaatctaacacgtttgaaaattttgctgccatcagctattactatggctgtgatataaacaccgcgttcaaattgttcaatgaccgatgtt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16017488 |
ctcgtacctgaatctaacacgtttgaaaattttgctgccatcagctattactatggctgtgatataaacaccgcgttcaaattgttcaatgaccgatgtt |
16017389 |
T |
|
| Q |
337 |
tctccttctctcacaggcctggacgactcctgtgatctgatactattttccgagtttggtggagagactgcattagttgataaatacgagctgctactgc |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16017388 |
tctccttctctcacaggcctggacgactcctgtgatctgatactattttccgagtttggtggagagactgcattagttgataaatacgagctgctactgc |
16017289 |
T |
|
| Q |
437 |
tttcttgacgatcatctcctccatttgttgatcgaacaacctcagaaacttcattgtttccttccagtctttgcttttgcaggtttgaagactcgctatc |
536 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||| |
|
|
| T |
16017288 |
tttcttgacgatcatctgctccatttgttgatcgaacaacctcagaaacttcattgtttccttccagtctttgctcttgcaggtttgaagagtcaccatc |
16017189 |
T |
|
| Q |
537 |
tgatg |
541 |
Q |
| |
|
||||| |
|
|
| T |
16017188 |
tgatg |
16017184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University